Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2051 ATGCGTCCCCCGCGGAAGAGGGTGGATTTCCTGCGCGGCGACAAGGTCGAGGTGTGCAGCAACGAGGAGGGCTTCCTCGGCTCCTTCTACGCGGCCACGGTCGTGTCCCGCCTCGACAACGGCCTCTACGTCGTCCGCTACGACACGCTCCTCGAGGACGACGAATCGCAGCCCTTGACGGAAACCCTCTTCCCCAAAGAGCTCCGCCCCGCGCCGCCGCGCGTCCGCGCCGGGGAGTTCGCGCTCTACCAGCGCGTCGACGCGTTCGACAACGACGGCTGGTGGGTCGGCCAGATCACCGGGAAATGCAGCGACTCGCATTACTTCGTGTATTTCGCGACCACGAACGAGGAGATAGCGTACCCTGCGTCCGGGATCAGGGTGCACCACGAGTGGCTCCATGGGGAGTGGGTTTTGTCCAATTGA 426 0.6479 MRPPRKRVDFLRGDKVEVCSNEEGFLGSFYAATVVSRLDNGLYVVRYDTLLEDDESQPLTETLFPKELRPAPPRVRAGEFALYQRVDAFDNDGWWVGQITGKCSDSHYFVYFATTNEEIAYPASGIRVHHEWLHGEWVLSN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2051 141 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 139 - -
Ssu3g2051 141 Pfam Agenet domain 13 73 IPR008395 -
Ssu3g2051 141 PANTHER - 7 139 - -
Ssu3g2051 141 Gene3D - 1 81 - -
Ssu3g2051 141 SMART agenet_At_2 78 134 IPR014002 -
Ssu3g2051 141 SMART agenet_At_2 8 76 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2051 Ssu-Chr3 67744913 67745338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2051 20 132 PHD Transcription Factor Family AT5G58610 30.597 1.51e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2051 - - gmx:106794115 249.21