Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2047 ATGGACTCCGTCGCCGGAGCTCCGCCGTCGGCCATCGTCCCCGCCGCGCCGCGCCCCCCTCCATCGTTCCCCGGCCGGGAAGACTGCTGGAGCGAGGACGCCACGTTCACGCTCATCGACGCGTGGGGCGAGCGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGCACTGGCAGGAGGTCGCCGGCGCCGTCAACAGCCGCCACGTCAGCGCCGCCGGCAAAAAACCGTTCCGCACCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGACGGCGGCTACCGCAGCCCCTGGCCGTTCTTCCCGCGCCTCGACGCCCTCATCGGCGACACTTTTCCGGTCAAAAAACTCTCGCCGCCGGCCGCCGCCAAACCACCGCCGCCGCTGGCGTGGATTACCTCGCACCCCGTCGGTCCCCGATCCGGAACTCAGAAACGGCCGGCTCCGGCGGCGGCGGCGCCGGCCGCCAGAGAAGACTCGTCCTTCCGCCGGAATTTCTCGGCCTTCGccgcggcggcggcggcggcggcggaggcCGAGAGCGGCGAGTCGGAGGGGTGGAGGTCGAGTAGCGGCACCGGGAGTGGGAAAAAGGGAAGAGAGAGTGAAAAGGAATTTGAATTTGGGTATAGAGAACTTGCTCAAGCTATTGAGAGGTTCGGTGAGATATATGAGAGAGTGGAGGGTATGAAACAGAGGCAAATGGTGGAGTTGGAGAAGCAGAGGATGCAGTTCGCTAAGGATTTGGAGTACCAGAGGATGCAGCTCTTCATGGAAACGCAGGTTCAGTTGCAGAAACTCAAGCGCACCAAGCATTCTTCTGGAGCTGACAGTTTCTCATAG 891 0.6004 MDSVAGAPPSAIVPAAPRPPPSFPGREDCWSEDATFTLIDAWGERYLELNRGNLRQKHWQEVAGAVNSRHVSAAGKKPFRTDVQCKNRIDTLKKKYKIEKARVSDSDGGYRSPWPFFPRLDALIGDTFPVKKLSPPAAAKPPPPLAWITSHPVGPRSGTQKRPAPAAAAPAAREDSSFRRNFSAFAAAAAAAAEAESGESEGWRSSSGTGSGKKGRESEKEFEFGYRELAQAIERFGEIYERVEGMKQRQMVELEKQRMQFAKDLEYQRMQLFMETQVQLQKLKRTKHSSGADSFS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2047 296 MobiDBLite consensus disorder prediction 196 219 - -
Ssu3g2047 296 Gene3D - 30 98 - -
Ssu3g2047 296 MobiDBLite consensus disorder prediction 135 149 - -
Ssu3g2047 296 MobiDBLite consensus disorder prediction 1 27 - -
Ssu3g2047 296 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 12 293 - -
Ssu3g2047 296 Pfam Myb/SANT-like DNA-binding domain 27 123 IPR044822 -
Ssu3g2047 296 MobiDBLite consensus disorder prediction 134 175 - -
Ssu3g2047 296 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 293 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2047 Ssu-Chr3 67554280 67558053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2047 179 285 Trihelix Transcription Factor Family AT3G14180 38.655 5.13e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu3g2047 Myb_DNA-bind_4 1.8e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2047 - - lang:109355153 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2047 3 67554280 67558053 Ssu3g2047 3 67554280 67558053 ECH