Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2036 ATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGGGAACCTAAACGGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGGTACAAAAATCGTGAACTGCAGTTAATGCGCTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCTACAACAAGCAATGACGAACTTTTTCTAAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAGGCACTACAATACTATGAACCAGAGAATGCCTATCATCTATGTGAAACTGTATACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACGCTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCCAAAGTTCTGgTCAAGGGGGAATCAAACATTTCTTACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTTTAGGACAGCCATTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCGAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATAGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGTTGCACTGCAGTGAGTAGGATAAACCATGATACCTCCCTTAACTTCCCCCCTTTAAAAGGAAAGGAAACATATATTGGAAGAAGTTTGCTCATTTTAACCTTGTTGCTGTGA 1029 0.4189 MSATVIEGNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSNDELFLNLVMEYVPETMYRVIRHYNTMNQRMPIIYVKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTAVSRINHDTSLNFPPLKGKETYIGRSLLILTLLL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2036 342 PANTHER OS02G0236200 PROTEIN 2 316 - -
Ssu3g2036 342 CDD STKc_GSK3 29 316 IPR039192 -
Ssu3g2036 342 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2036 342 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 316 - -
Ssu3g2036 342 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Ssu3g2036 342 Pfam Protein kinase domain 34 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2036 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Ssu3g2036 342 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Ssu3g2036 342 Gene3D Transferase(Phosphotransferase) domain 1 114 325 - -
Ssu3g2036 342 SUPERFAMILY Protein kinase-like (PK-like) 33 320 IPR011009 -
Ssu3g2036 342 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2036 Ssu-Chr3 67305023 67307632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2036 38 315 MAP Kinase Gene Family AT3G59790 34.602 1.01e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Ssu3g2036 Pkinase 8.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2036 K14502 - gmx:100810924 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2036 3 67305023 67307632 Ssu3g2036 3 67305023 67307632 ECH