Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2034 ATGATGTCCAGGTCGTATACGAATCTTTTAGATTTGGCCTCCGGGAATTTCCCGGCAATGGGGAGGGAGACTAGGGAACGGAAGCGGATGCCAAGGGTTATGAGTGTCCCGGGGTTTGTCACCGAGGTAGATGATGATCGGGCAGTTAGTGTTTCCTCTGATAATCCGTCGACTGTTACTACGGATAGAATGATCATTGTAGCAAACCAGCTACCGTTGAAGGCAAAGCGAAAAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGATTCATTGCTTTTACAACTTAAGGATGGACTTCCGGATGACATGGAGGTTCTCTATGTTGGGTCGTTACGTGTTGACATTGATCCAGAGGAACAGGATGACGTTTCACagtatttattagataaattcaaatgtGTCCCCACTTTTCTACCCGCTGACATTTTGGCAAAATTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTCTTTCATTACATGTTGCCATTTTCAACAGATAAAAGCCACCGATTTGATCGCACTTTGTGGGAAGCATACGTGCTGGCAAAcaagctatttttttataagctagttgaaatAATAAACCCAGAGGATGATTACATTTGGATTCATGATTATCATTTAATGGTGCTGCCATCATTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCGTCAGAGATATATAGGACTCTTCCGGTCAGGGAAGAGATACTGAAGGCTTTACTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGTTGTAGTCGTATGTTGGGTCTGGAGTATCAGTCAAAAAGGGGCTATTTAGGATTGGAGTATTATGGAAGGACAATCAGCATTAAGATTATGCCTGTTGGGATTCACATGGGTCGGATTGAGTCAGTTATGAGAATGGCAGATGAGGAGTGTAAGGTAAGGGAGCTCAAACAGCGATTTGAAGGAAAAACCATCTTGCTTGGTGTTGACGACATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTTAAACAACATCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATACATCTGGAGGAGATACATTCTGAAATACAAGAAAGCTGCAGCAGGACCAACAGAGTGTATGGGCGACCTGGTTACAACCCTATTGTTTTTATTGATAGAGCAGTTCCTATTGCTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAATATATTGCATGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGAGCAATCCGTGTCAATCCATGGAATGTTGAAGCAACTGCAGAGGCAATGAATGAGGCCATCTCAACGGGAGATGGAGAGAAACAGTTGCGACATGAGAAGCATTACCGGTACGTCAGCACTCATGATGTGGCTTACTGGTCACGTAGTTTCTTACAAGACATGGAGCGGGCTTGCTTAGACCTTGTAAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTCTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCTTGTCTATTTTGGAATCACTTAGTGCAGACCccaaaaatgttgttttcattGTTAGTGGACGGGGGAGGGGTAGCTTAAGTGACTGGTTTACTCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGGTATTTCTTGAGATGGTCTCAGAATGGAGAATGGGAAATTTGTGGTAAGTCCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACTATATACAGAGGCGACTGACGGTTCCTccattgaaagaaaagaaagtgctTTAGTCTGGCAATACCGTGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTGGAAGTAAAGCCCCAGGATGTGAGCAAAGGCTTAGTTGCCGAAAGGATATTTTCGTCAATGCACGGGAGAGGCAAACAGGCTGACTTTGTGCTGTGTGTTGGGGATGACAGATCAGATGAGGACATGTTTGAAATAGTTAGCAGTGCCAAATCAAGGAATATTCTTGACACCGATGCGTCTGTGTTTGCTTGCACGGTTGGACAAAAACCAAGCAAAGCAAAGTATTATGTGGACGATACGACTGAGGTAATAAGCATGCTAGAATCTTTGGCCGAAGAATCGGATTCTTCGCTCCGCATAGAAGTAATTGGGGGTTCCTCTTGA 2574 0.4196 MMSRSYTNLLDLASGNFPAMGRETRERKRMPRVMSVPGFVTEVDDDRAVSVSSDNPSTVTTDRMIIVANQLPLKAKRKEDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPEEQDDVSQYLLDKFKCVPTFLPADILAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFYKLVEIINPEDDYIWIHDYHLMVLPSFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKVRELKQRFEGKTILLGVDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQIVNPARGKGIHLEEIHSEIQESCSRTNRVYGRPGYNPIVFIDRAVPIAEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISTGDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACLDLVRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSKEVLSILESLSADPKNVVFIVSGRGRGSLSDWFTPCKKLGIAAEHGYFLRWSQNGEWEICGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMHGRGKQADFVLCVGDDRSDEDMFEIVSSAKSRNILDTDASVFACTVGQKPSKAKYYVDDTTEVISMLESLAEESDSSLRIEVIGGSS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2034 857 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Ssu3g2034 857 Gene3D - 721 850 IPR023214 -
Ssu3g2034 857 Gene3D - 592 693 IPR023214 -
Ssu3g2034 857 Gene3D Glycogen Phosphorylase B; 317 530 - -
Ssu3g2034 857 Gene3D Glycogen Phosphorylase B; 56 316 - -
Ssu3g2034 857 TIGRFAM T6PP: trehalose-phosphatase 590 841 IPR003337 GO:0003824|GO:0005992
Ssu3g2034 857 CDD HAD_TPP 594 833 - -
Ssu3g2034 857 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 595 796 IPR006379 -
Ssu3g2034 857 SUPERFAMILY HAD-like 593 841 IPR036412 -
Ssu3g2034 857 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Ssu3g2034 857 Pfam Trehalose-phosphatase 596 830 IPR003337 GO:0003824|GO:0005992
Ssu3g2034 857 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Ssu3g2034 857 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 852 - -
Ssu3g2034 857 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2034 Ssu-Chr3 67253558 67257625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2034 1 847 Trehalose Biosynthesis Gene Families AT1G06410 77.568 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2034 K16055 - gmx:100811463 1623.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2034 3 67253558 67257625 Ssu3g2034 3 67253558 67257625 ECH