Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2025 ATGAGCCGCAACATGAACAATTTCACCCCTTTGCCAGGGCCTTGGCAAAGAGGTTTTAGATCCTATGATGGCCACACTTTCAGTGATCGTGAATCCAATGAGGTTCCTGTGTTTTACAGATCTCGCTCTACTCATGCCACCGATGACAGAAGTTCAGGTGGATTAGCTCAACAACGGTTTTGGGACTTCAGAACTCCTTTAGGATTCCACGGTATACCAAATTTTCCAGCACCACCACCTAGCagacaacaaattaatatttacaatggTGATATGGGAAGGCTCAGGGAGATTTTCCTTCAGCCACCTCCAAGATCCACATTTCAAATAAGCGCACAAGTCCCCCCATCGGTAGAAATTTCCAAATCAACAGCTCTGAGCAAGCTTAAGAAAGTAGTCTATGAACCTCCCCCAACGCAGTATGCTAGGAGGGTGagcttatattacagaaataaTAATGCTGCAAAGTCTTTgaaagagaaggagagagaaaaggatGAAGATGGCAAGAGGTGTGCTATTTGCTTAGAAGATTTCGAGTCTAATGAAGAGGTGATGCTCACTCCATGCAAGCACATGTTTCATGAGGATTGCATAGTACCATGGCTAACAAGCAAAGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGAGAGGAAGGGGGAATCCTTCATCCttcaacaacaataacattgCCAATTTGGAACCTAGCGACCTGATTAATGGAGAGCTTTTGTCAATTTGGAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGTATTACTTATTAA 792 0.4028 MSRNMNNFTPLPGPWQRGFRSYDGHTFSDRESNEVPVFYRSRSTHATDDRSSGGLAQQRFWDFRTPLGFHGIPNFPAPPPSRQQINIYNGDMGRLREIFLQPPPRSTFQISAQVPPSVEISKSTALSKLKKVVYEPPPTQYARRVSLYYRNNNAAKSLKEKEREKDEDGKRCAICLEDFESNEEVMLTPCKHMFHEDCIVPWLTSKGQCPVCRFVICERGRGNPSSFNNNNIANLEPSDLINGELLSIWRAMEEAFQLGSITY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2025 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 227 IPR013083 -
Ssu3g2025 263 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 263 - -
Ssu3g2025 263 CDD RING-H2_PA-TM-RING 172 213 - -
Ssu3g2025 263 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Ssu3g2025 263 SUPERFAMILY RING/U-box 162 219 - -
Ssu3g2025 263 SMART ringv_2 171 213 IPR011016 GO:0008270
Ssu3g2025 263 SMART ring_2 172 212 IPR001841 -
Ssu3g2025 263 Pfam Ring finger domain 171 213 IPR001841 -
Ssu3g2025 263 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2025 Ssu-Chr3 66859484 66860902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2025 126 260 C3H Transcription Factor Family AT3G58720 50.714 4.51e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2025 - - gmx:100810607 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2025 3 66859484 66860902 Ssu3g2025 3 66859484 66860902 ECH