Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2020 ATGAGCCGCAACATGAACAATTTCACCCCTTTGCCAGGGCCTTGGCAAAGAGGTTTTAGATCCTATGATGGCCACACTTTCAGTGATCGTGAATCCAATGAGGTTCCTGTGTTTTACAGATCTCGCTCTACTCATGCCACCGATGACAGAAGTTCAGGTGGATTAGCTCAACAACGGTTTTGGGACTTCAGAACTCCTTTAGGATTCCACGGTATACCAAAaaataaTAATGCTGCAAAGTCTTTgaaagagaaggagagagaaaaggatGAAGATGGCAAGAGGTGTGCTATTTGCTTAGAAGATTTCGAGTCTAATGAAGAGGTGATGCTCACTCCATGCAAGCACATGTTTCATGAGGATTGCATAGTACCGTGGCTAACAAGCAAAGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGAGAGGAAGGGGGAATCCTTCATCCttcaacaacaataacattgCCAATTTGGAACCTAGCGACCTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGTATTACTTATTAA 564 0.4043 MSRNMNNFTPLPGPWQRGFRSYDGHTFSDRESNEVPVFYRSRSTHATDDRSSGGLAQQRFWDFRTPLGFHGIPKNNNAAKSLKEKEREKDEDGKRCAICLEDFESNEEVMLTPCKHMFHEDCIVPWLTSKGQCPVCRFVICERGRGNPSSFNNNNIANLEPSDLINGELLSILRAMEEAFQLGSITY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2020 187 CDD RING-H2_PA-TM-RING 96 137 - -
Ssu3g2020 187 SMART ring_2 96 136 IPR001841 -
Ssu3g2020 187 SUPERFAMILY RING/U-box 86 143 - -
Ssu3g2020 187 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Ssu3g2020 187 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 74 - -
Ssu3g2020 187 Pfam Ring finger domain 95 137 IPR001841 -
Ssu3g2020 187 SMART ringv_2 95 137 IPR011016 GO:0008270
Ssu3g2020 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 151 IPR013083 -
Ssu3g2020 187 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 76 187 - -
Ssu3g2020 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 74 - -
Ssu3g2020 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 76 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2020 Ssu-Chr3 66647261 66648684 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2020 74 183 C3H Transcription Factor Family AT3G58720 52.679 3.35e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2020 - - gmx:100810607 186.422