Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2012 ATGTATTCAGTTTTGAAGAAGGAAATAGTTCCTGCTGGAAAGGCAATGGACTTACCCATATTGAGGATAAACGATTCACAAGTGAATTCTGAGATTCCAGCATTGCCTCCACCAAAGTCTGCAAACGCTACTTCTTCGGCGGGTAGTTCCTCAATCCAAAGGAATCCTAATTTCTACATTGAACGGGCACGTGACCTTTTCGTTGCAATGTCACTATATGCTGAGCCAACCAAATCCAAAGTATGCGAACTTGCATATAGGTCTATGGATGAGTTATCAAAAATAGCTGCCGCGGGAGAACCCTTATGGCAACCTCGAAAAGGCCATAAGTTCAAGACTATGAATGATACTGAATATCGGAAATTTTTTTTGCCGCTTGGGGAGGAACCAATAAACGAATTGCAAGTTGATGCTTCTCAAGAtatgaaaattgttaaaatgaATGCACTCGACATTGTTCAATTACTTATGAATGTGAATGAATGGTCGAGCACATTTTATAATATGGTCTCAAGAGGAGCATTCCTTGGAGTCTTTATGAGTGGAGTGGGAGGAAGCTACGACGGAAAATTGCAAGTGATGACTGCAGAATTCCAGTTTCCTTCACCGTTTCTAGCTACCAGAGAATGTTATTTCGGAAGGTACTGTAAGAAGTTCTCTAACAAAATGTGGGGGGTTGTAGATTTTTCATTGGAGAAGATGTTTCCTGATCCAAACACCAACTTTCGAAGAAGACCATCTGGTTGTTTGATAAGACAAATGTCAAATGAATACTGTGAGGTTGTTATATGGGTGGAGCATGCTATAGACACAACAAGCTATAACAGTCAATTCCGACCGGTCGTTTATTCAGGTTTGGCCTTTGGTGCATCGCGATGGCTTGCTTCATTAGTTCGAAGGATTGAATGCTCTGAACCTCCAACAACAATGCCCATACCATACCATGAAAGGCAAACAAGTCTCTTAAACGTGGCAGGAAGAATGATGAGAAGCTTTTGTGGTGATATGAATGCTTCCTCAAAAAACCAGTGGACAAGTGTTAGCTCATTGGTTGGTTCTCAAGAGGTAAAGATCAAGGTTAAGGACATTATAAAGGATTTTGGAAAGCCTCAAGGTGCAACAGTGATTTTCTCTACTTTTGTTCGGCTTCCAACCCCACCAAGGCTATTATTTGACTTCCTTCGTATCCCGGTTTCTAGACTAAAGTGGGATAAGCTTTCAAGCCAATATTCTTCTATTCGAGAACTCTCCTCCATTACTCAAAGCAATGATCCGAGGAATCGCGTTTCTATCATTGAATTACAGAACGATGGGGACGgccaatttatgttttatttgcaaGAGAGCTACTTGGACACATCAACATGCTCCTCCCACATAGTTTATTTTCCAATAGAGAAGTTAGCTTTGTCAAATCTTTTAAATGGAGGAAACCCACTACATGTGACTATTGAACCTTCAGGGTTTACTATTGTTGCTGATGGGATTGACGGTGACAATAATGGTAATGATGGTGCCAGCGGAAGTATCTTAACCATTACATATAGTATCATGATGAGTACCACCCGTACTACTCCACTCATTGTATCTTCCGAAGCACTTGCTAGATTCATCGAGTTGTGCACTTGCACTATCAATGTTATAAAGGGTGAAGTTCTCCGTAACAATGTGTGA 1674 0.402 MYSVLKKEIVPAGKAMDLPILRINDSQVNSEIPALPPPKSANATSSAGSSSIQRNPNFYIERARDLFVAMSLYAEPTKSKVCELAYRSMDELSKIAAAGEPLWQPRKGHKFKTMNDTEYRKFFLPLGEEPINELQVDASQDMKIVKMNALDIVQLLMNVNEWSSTFYNMVSRGAFLGVFMSGVGGSYDGKLQVMTAEFQFPSPFLATRECYFGRYCKKFSNKMWGVVDFSLEKMFPDPNTNFRRRPSGCLIRQMSNEYCEVVIWVEHAIDTTSYNSQFRPVVYSGLAFGASRWLASLVRRIECSEPPTTMPIPYHERQTSLLNVAGRMMRSFCGDMNASSKNQWTSVSSLVGSQEVKIKVKDIIKDFGKPQGATVIFSTFVRLPTPPRLLFDFLRIPVSRLKWDKLSSQYSSIRELSSITQSNDPRNRVSIIELQNDGDGQFMFYLQESYLDTSTCSSHIVYFPIEKLALSNLLNGGNPLHVTIEPSGFTIVADGIDGDNNGNDGASGSILTITYSIMMSTTRTTPLIVSSEALARFIELCTCTINVIKGEVLRNNV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2012 557 SMART START_1 83 303 IPR002913 GO:0008289
Ssu3g2012 557 CDD START_ArGLABRA2_like 78 302 - -
Ssu3g2012 557 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 122 IPR042160 -
Ssu3g2012 557 PANTHER PROTEIN FWA, PUTATIVE-RELATED 132 553 - -
Ssu3g2012 557 PANTHER PROTEIN FWA, PUTATIVE-RELATED 39 122 - -
Ssu3g2012 557 ProSiteProfiles START domain profile. 74 302 IPR002913 GO:0008289
Ssu3g2012 557 MobiDBLite consensus disorder prediction 31 51 - -
Ssu3g2012 557 Pfam START domain 84 298 IPR002913 GO:0008289
Ssu3g2012 557 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 132 553 IPR042160 -
Ssu3g2012 557 SUPERFAMILY Bet v1-like 78 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2012 Ssu-Chr3 65771089 65779761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2012 65 552 Homeobox Transcription Factor Family AT4G04890 38.039 1.54e-106 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2012 K09338 - jre:108992281 337.035