Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2005 ATGGCTACCACCATAATAGAGCTGGCCTCCTCACGTGCCTCGCACGTGCTCGACGACGCCTCCCCCGCCACCTCGGACGAGGACACCGAGGAGGAGCACGCACACGACGAGCACGACTCCGCCGGCGAGGGGTGGTTGTTCGCGGCGGCGTGCGGGGGCGCGCGGCGGAGCGGGGGAGGCGCGTTGGGGCGGGTCCTGGACCCGAGGGCGAACTGGGTCCAAGAATGGAACCGGGTGTTCCTGCTAGTGTGCGCCGCCGGGTTGTTCGTGGACCCGCTCTTCTTCTACGCGCTCTCCGTCAGCGACTCGTGCATGTGCATCTTCGTCGACGGGTGGCTGGCCGTCACCGTCACGGTGCTGCGGTGCTTGGCGGACGCGCTGCACGTGTGGAACATGGTGCTGCGGATCAAGATGGCGAAACGCACGTTCGGATTGGGCGCCGCGGGTGGCTCCTCCGCCGGACTCAGAGACACCAGGCCGCGCTCCGTCGCGCTTGGGTATCTCAAGTCACGGTCGGGATTCTTCTTTGACTTGTTCGTTATTCTTCCTCTACCACAGATTGTGCTTTGGGTGGCAATCCCCTCCTTGTTGGAGAAAGGTTCAGTGACGTTGGTGATGACGGtgttcttaattatatttctcttccAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTGCGACGCACGCAAAACCTCTCAGGCTACATTTTTGGAACAGTATGGTGGGGAATCGCCCTTAACATGATCGCGTATTTTGTTGCTTCCCATCATTTTACggttttctctcttctttggAGCTCAATGTCACGTGCTGCAAGCAAGGCTGCCACAGTGGCAGCAGGAGCGTGTTGGTACTTGCTGGGGATCCAAAGGGCAGCCAAGTGTCTGAAAGAGCAGTGTGAGAAAACAAGTGGTTGTGGCATCAAAATTCTGTCGTGTCAAACGCCTATATATTATGGAAGCAATAGTTTGTTAGTTAGGGGTAGAGCAAGATTGGCATGGGCAGGGAACAGTGACGTGAGGTCCACGTGCTTACATGGCCCTGACAACTACAACTATGGAGCTTATAAATGGACTGTTCAGCTTGTCACTAATGATAATCGATTAGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGTACAACTGAATGGCTAGAAGTAGTTTTCAACATCATCGTGCTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACGACGTCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGGCGCTTGCCGCAAGGGTTTCGGCAGCGCGTGCGTAACTATGAGAGGCAGCGTTGGGCTGCTATGCGTGGGGTTGATGAATGCGAGATGACCAGAAATCTTCCCGAGGGATTAAGAAGAGATATCAAATACCATCTTTGTTTAGACTTGGTGAGACAGGTGCCACTATTTCAACACATGGACGAACTGGTTCTAGAGAACATCTGTGATCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCCAGAGAAGGAGACCCAGTTCAGAGAATGCTATTTGTAGTAAGGGGTCACCTTCAGAGCAGCCAAGACCTAAGGGATGGTGTGAAGAGTTGCTGCATGCTAGGTCCAGGAAACTTCAGTGGGGACGAACTCCTCTCATGGTGTTTAAGGAGACCCTTCATAGAGCGCCTTCCACCATCTTCATCCACACTCATGACATTGGAAACCACTGAGGCATTTGGCCTTGAAGCCGAGGATGTGAAGTATGTGACACAACATTTCAGGTACACGTTCGTCAAGGAAAAGGTGAAGAGAAGTGCAAGGTACTACTCTCCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCGTGGAGGAGGTACAAGCATAGGTTGACTTTGACCTCGTTGTCCTTCATAAGGCCTAGGAGGCCTTTGTCACGGTCCTCTTCCCTGGGAGAGGACAGGCTTCGCCTCTACACGGCTTTGTTAACCTCACCAAAGCCTAATCAGGatgattttgacttttga 2106 0.5109 MATTIIELASSRASHVLDDASPATSDEDTEEEHAHDEHDSAGEGWLFAAACGGARRSGGGALGRVLDPRANWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCIFVDGWLAVTVTVLRCLADALHVWNMVLRIKMAKRTFGLGAAGGSSAGLRDTRPRSVALGYLKSRSGFFFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHHFTVFSLLWSSMSRAASKAATVAAGACWYLLGIQRAAKCLKEQCEKTSGCGIKILSCQTPIYYGSNSLLVRGRARLAWAGNSDVRSTCLHGPDNYNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQDLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLMTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSLGEDRLRLYTALLTSPKPNQDDFDF 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2005 701 Gene3D Jelly Rolls 502 620 IPR014710 -
Ssu3g2005 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 10 261 - -
Ssu3g2005 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 275 698 - -
Ssu3g2005 701 MobiDBLite consensus disorder prediction 16 39 - -
Ssu3g2005 701 ProSiteProfiles cAMP/cGMP binding motif profile. 504 614 IPR000595 -
Ssu3g2005 701 Gene3D Helix hairpin bin 429 495 - -
Ssu3g2005 701 SUPERFAMILY Voltage-gated potassium channels 68 425 - -
Ssu3g2005 701 SUPERFAMILY cAMP-binding domain-like 430 618 IPR018490 -
Ssu3g2005 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 261 - -
Ssu3g2005 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 275 698 - -
Ssu3g2005 701 CDD CAP_ED 504 610 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2005 Ssu-Chr3 65544994 65556046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2005 50 700 Ion Channels AT5G54250 76.328 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2005 K05391 - gmx:100796761 1191.79