Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1992 ATGTCAGGTCTGAGCAATCTGGTTGGTAGAACCTTTGGTCTTGGAGAATCGAGTTTTATGTCTGAATTAGACGCTCAGATTCCTACTGCCTTCGATCCTTTTGCTGAGGCAAATGCTGATGACTCGGGTGCTGGGTCAAAGGAGTATGTGCATATTCGCGTACAGCAGCGAAATGGTAGGAAAAGCCTGACAACTGTTCAGGGATTGAAAAAAGAATTCAGCTATAACAAGATACTTAAAGACGTTAAAAAAGAGTTCTGTTGCAATGGCACAGTTGTTCAGGACCCAGAACTAGGACAGGTCTGTGTTGACATCCTCCTGTCAAACAAAATGATCTATCCCTTGTTGCTTCAAGTAACTCATGTTTGTGATTGTAGGTTATTCAACTTCAAGGTGATCAGCGGAAGAATGTTTCTACTTTCCTTGTCCAGGTAA 435 0.423 MSGLSNLVGRTFGLGESSFMSELDAQIPTAFDPFAEANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVCVDILLSNKMIYPLLLQVTHVCDCRLFNFKVISGRMFLLSLSR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1992 144 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 15 127 - -
Ssu3g1992 144 ProSiteProfiles Translation initiation factor SUI1 family profile. 50 100 IPR001950 GO:0003743|GO:0006413
Ssu3g1992 144 Pfam Translation initiation factor SUI1 47 100 IPR001950 GO:0003743|GO:0006413
Ssu3g1992 144 Gene3D - 15 105 - -
Ssu3g1992 144 PANTHER BNAA09G12640D PROTEIN 15 127 - -
Ssu3g1992 144 CDD eIF1_SUI1 48 101 IPR005874 GO:0003743
Ssu3g1992 144 SUPERFAMILY eIF1-like 20 100 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1992 Ssu-Chr3 65234574 65235796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1992 20 101 Eukaryotic Initiation Factors Gene Family AT4G27130 89.024 2.77e-52 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1992 K03113 - gmx:100306129 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1992 3 65234574 65235796 Ssu3g1992 3 65234574 65235796 ECH