Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1990 ATGGGGGACAATAGTATGTTTCGTTATGCAGATGGAGTGGACAAGTTGTTGATGTTCTTTGGGACCTTGGGAAGCCTAGGAGATGGGCTACAGACCCCTCTCACGATGTACATTCTTAGTGATGTGATCAATGCCTATGGAGACAAGAATAGTCACTTGACAAAGCATGATGTGAACAAGTATGCGTTGAGGCTTTTTTTTGCTGCAATTGGAGTTGGACTTTCAGCTTTTATTGAAGGAATATGCTGGACAAGAACTGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTTAGACAAGAAGTTGGTTTCTTTGATACCCAGACTTCTGGTTCTTCAACAACCTACCAAGTTGTCTCACTGATTTCCTCAGATGCAAATATGATCCAAGTTGTCTTGTGTGAGAAGATACCTGACTGCCTGGCTTACATATCAACATTCCTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACACTGGCAGCCATACCACTCTCTGTCATGTTCATTGTACCAGCACTTGTATTTGGGAAGATCATGTTGGATCTTGCAATGAAAATGATTGAGTCTTATGGGGTTGCCGGTGGGATAGCAGAACAGGCAATATCTTCAATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACAAAACAGATTTAGCAGCGCACTTCAAAAAACTATGGAGTTTGGGATAAAGCAAGGTTTTGCAAAAGGGTTGATGTTGGGAAGTATGGGagttatttatataagttgGGGTTTTCAGGCTTGGGTTGGAACATTTCTGATCACTAAAAAAGGAGAACAAGGTGGCCATGTATTTGTAGCTGGCTTCAATGTCCTCATGGGAGGCTTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCATCACAGAAGCAACTGCAGCTGTCACTCGTCTTTTTGAAATGATTGATCGGGTGCCAACTATAGATTCTGAAGATAAGAAAGGAAAGGCCTTATCATATGTGAGAGGAGAAATTGAATTTCAAGACATCCACTTCTGTTACCCATCTAGGCCAGACACACCAGTCTTGCAAGGATTCAATCTCACTGTCCCAGCAGGCAAGAGGGTAGGCCTTGTGGGAGGTAGTGGCTCTGGTAAATCCACTGTCATAGCATTGCTGGAAAGGTTATATGATCCTGTTGAGGGAGAAATACTCTTGGATGGTCACAAGATTAATAGGCTTCAGTTGAAGTGGTTGAGATCTCAACTTGGCCTAGTAAATCAAGAGCCTGTTCTCTTTGCCACATCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAGTGTGATAACTGCGGCTAAAGCAGCTAATGCACATGATTTCATTGTCAAGTTGCCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGATTCCAATTGTCTGGTGGGCAGAAGCAACGCATTGCCATAGCAAGAGCCTTACTAAGGGATCCAAAGGTTCTCTTGCTTGATGAAGCTACCAGTGCACTGGATGCTCAATCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCACCGCTTGTCTACAATTCGAACAGCTCACTTGATTGCAGTCCTTCAAGCAGGGAAAGTGGTTGAATCAGGTACTCATAACGAGCTCATGGAATTGACAGATGGTGAGTATGCTCACATGGTAGAGTTGCAGCAAGTAAGAACTCAAAATGATGAAACCAAACCTTCCAATCTTCAAATAGAAGGAAAGAGCTCCCACAGAATGAGCATTCCTCAAAGTCCAGCTGTAAGTTTCAGATCAAGCACTGTAGGTTCTCCAATGTTATATCCCTTCAGTCAGGGATTTTCCATGGGAACACCTTACTCCTACTCTATCCAATATGATCCTGATGATGATAGTTTTGAAGATAACTTGAAAAGACCAAATCATCCAGCTCCTTCACAGTGGCGTTTGCTGAAAATAAATGCACCTGAGTGGGGAAGAGCAGTGCTAGGAATCTTAGGAGCAATAGGATCAGGAGCAGTACAACCTGTAAATGCATACTGTGTAGGAACACTTATAtctgtttattttgaaactgaTAGCTCTGAGATGAAGAATAAAACTAAAGTCCTGGCCCTCGTTTTCTTAGGAATTGGTGTTTTCAACTTCTTCACTAGTATTCTCCAACACTATAACTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGAGAGAAGATACTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCATGAAGAGAACACAAGTGCATCCATTTGTGCAAGATTATCCTCTGAAGCCAACTTGGTCCGTTCCCTTGTTGGTGATCGGATGTCTTTGTTGGCCCAAGCATTTTTTGGGTCTGTCTTTGCCTACACACTAGGACTTGTGCTCACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAGCCATTAGTCATCGGAAGCTTTTACTCAAGAAGTGTCTTGATGAAGAGCATGGCAGATAAAGCTCGCAAAGCGCAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCATAGAACCATAACTGCCTTCAGCTCTCAGAAAAGAATGTTGGCACTTTTCAAATCCACAATGGTGGGGCCTAAAAAGGAGAGTGTTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCCCAGTTTTTCAACACTGCATCAACAGCATTGGCATACTGGTATGGTGGGAGGCTCCTGATAGATGGGCACATAGAACCAAAGCACCTCTTCCAAGCATTTTTAATACTACTCTTCACTGCATACATTATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGTGCAGTTGGATCAATTTTTGCAATCTTAGACAGGAAAACTGAGATTGATCCTGAGACCTCATGGGGAGgtgagaaaaagaggaaaataagGGGCAGAGTGGAGCTTAAAAGTGTTTTCTTTGCATATCCAAGTAGACCTGATCAAATGATTTTCAAGGGTCTGTGTCTTAAAGTTGAACCTGGGAGAACAGTGGCTCTAGTGGGGCACAGTGGTTGTGGTAAATCAACTGTTATTGGTCTTATTGAAAGGTTTTATGATCCTGCAAAGGGAACTGTGTGCATAGATGAACAGGACATCAAGTCCTATAATTTGAGAATGCTGAGGTCACAAATTGCATTAGTGAGTCAGGAGCCAACCCTTTTTGCTGGCACCATTCGAGAAAATATTGCCTATgggaaagaaaatataactGAATCTGAGATAAGAAGGGCTGCATCTCTGGCTAATGCTCAAGAATTCATAAGTGGAATGAATGATGGGTATGAGACATACTGCGGGGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAACAAAGAATAGCCTTAGCTAGGGCCATACTGAAGAATCCTTCAATACTTCTTCTGGATGAAGCTACCAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTGGAGAAGATTATGGTTGGAAGAACATGCATAGTAGTGGCACACAGGCTATCTACAATACAAAAATCCAACTCCATTGCTGTGATTAAGAACGGGAAGGTTGTAGAACAAGGTTCACATAACGAATTGATTTCACTTGGACGTGATGGAGCATACTATTCTCTTGTTAAACTTCAAAGTGGTAGCTCCCCTAGGTAA 3747 0.4161 MGDNSMFRYADGVDKLLMFFGTLGSLGDGLQTPLTMYILSDVINAYGDKNSHLTKHDVNKYALRLFFAAIGVGLSAFIEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTSGSSTTYQVVSLISSDANMIQVVLCEKIPDCLAYISTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTQNRFSSALQKTMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTFLITKKGEQGGHVFVAGFNVLMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPTIDSEDKKGKALSYVRGEIEFQDIHFCYPSRPDTPVLQGFNLTVPAGKRVGLVGGSGSGKSTVIALLERLYDPVEGEILLDGHKINRLQLKWLRSQLGLVNQEPVLFATSIKENILFGKEGASMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTAHLIAVLQAGKVVESGTHNELMELTDGEYAHMVELQQVRTQNDETKPSNLQIEGKSSHRMSIPQSPAVSFRSSTVGSPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNLKRPNHPAPSQWRLLKINAPEWGRAVLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKNKTKVLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEENTSASICARLSSEANLVRSLVGDRMSLLAQAFFGSVFAYTLGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKSMADKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKKESVRQSWISGFGLFSSQFFNTASTALAYWYGGRLLIDGHIEPKHLFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSIFAILDRKTEIDPETSWGGEKKRKIRGRVELKSVFFAYPSRPDQMIFKGLCLKVEPGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSYNLRMLRSQIALVSQEPTLFAGTIRENIAYGKENITESEIRRAASLANAQEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRDGAYYSLVKLQSGSSPR 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1990 1248 SMART AAA_5 370 555 IPR003593 -
Ssu3g1990 1248 SMART AAA_5 1030 1222 IPR003593 -
Ssu3g1990 1248 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524
Ssu3g1990 1248 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Ssu3g1990 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1990 1248 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1243 IPR039421 -
Ssu3g1990 1248 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Ssu3g1990 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1003 1239 IPR003439 GO:0005524
Ssu3g1990 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1242 IPR027417 -
Ssu3g1990 1248 Gene3D ABC transporter type 1, transmembrane domain 70 909 IPR036640 GO:0005524|GO:0016021
Ssu3g1990 1248 Gene3D - 341 594 IPR027417 -
Ssu3g1990 1248 Gene3D - 993 1246 IPR027417 -
Ssu3g1990 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 582 IPR027417 -
Ssu3g1990 1248 CDD ABC_MTABC3_MDL1_MDL2 343 581 - -
Ssu3g1990 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Ssu3g1990 1248 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016021
Ssu3g1990 1248 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1990 1248 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1990 1248 CDD ABC_MTABC3_MDL1_MDL2 1003 1242 - -
Ssu3g1990 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1990 1248 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Ssu3g1990 1248 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1243 - -
Ssu3g1990 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 985 - -
Ssu3g1990 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Ssu3g1990 1248 SUPERFAMILY ABC transporter transmembrane region 666 986 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1990 Ssu-Chr3 65218263 65225526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1990 6 1248 Calmodulin-binding Proteins AT2G36910 43.839 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1990 K05658 - gmx:100788127 2315.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1990 3 65218263 65225526 Ssu3g1990 3 65218263 65225526 ECH