Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1983 ATGGCTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGCTTTGATCGACGATATTCCCGTCGCAGATTCCACCTTCGCGGTCCCTTCCTCTGCCTTCACGTGGCCCCCGAACTCATCGAATGTCGGTGTTGAAATCGATGACTCATTGGGGGATTCTGACGGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGGTCTGAGTCATGTGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAGGCTTAACGACAAGTACACTTTTTACTTCCAAATTCCAACTACATCTACCTCCTgtGCCTACCAAGACAGACAAGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGAGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCTAGTTTCATGCCTCCCCCTGCTGCAATCCCTGCTGCATTTGCGGCACAAGGCCAAGCCCATGGCAGCAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCACGTTCTCCGTCCACCAGTTGCCTAA 705 0.4851 MASRENTNWLFDYALIDDIPVADSTFAVPSSAFTWPPNSSNVGVEIDDSLGDSDGLKESGSKKRVRSESCAASSSKACREKLRRDRLNDKYTFYFQIPTTSTSCAYQDRQAAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGSKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1983 234 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 234 - -
Ssu3g1983 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 143 IPR036638 GO:0046983
Ssu3g1983 234 Coils Coil 121 176 - -
Ssu3g1983 234 Gene3D - 114 176 - -
Ssu3g1983 234 MobiDBLite consensus disorder prediction 44 64 - -
Ssu3g1983 234 MobiDBLite consensus disorder prediction 50 64 - -
Ssu3g1983 234 PANTHER BHLH TRANSCRIPTION FACTOR 1 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1983 Ssu-Chr3 65041425 65044907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1983 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 64.050 3.03e-96 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1983 - - gmx:100788858 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1983 3 65041425 65044907 Ssu3g1983 3 65041425 65044907 ECH
Ssu8g1029 8 17673224 17675324 Ssu3g1983 3 65041425 65044907 PCT