Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1980 ATGATCACCAAAACCCAGAACCGACCTCCATTATCACTCACATCCACACCTTCACCTCCTTCAAAGAGTTTTGAGGGTGACGTGCTCCTCCTAGATAGCAAAGGGCGACGAGTTGGAGCAGAGAAAATGGTGGGGACACCAATTAATGGAAGAGCAAGGCAAGCTTTCACAGTTGTCAATGGTGGTGGCCTCGATCTTGGCCCCAGTAGTGCTCCACCAAGCAATGCTGGATCGGATTATGGTGTCATAGAGTTCACAAGAGAGGATGTGGAAGCATTGCTTAATGAGAAAGCCAAGAGAAAGGACAGATTTAATTATAAGGAAAGATGTGAAAATATGGTGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATGGTTCCAAGACCTTGAGATGTACTACTCTCTAGAGcaggaaaaattaaagaattcaCTGGAATTGACCCGGCAAAAAAGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGaagaattaaattcaattattacGGAAATGAGAAGGAATTGCACttctttacaagaaaaattgatAAAGGAGGAAACGGAAAAGTCGGCTGCAGTGGAATCTCTTGTTAAAGAGAGAGAGGCTAGGCTTGACATTGAGAGGTCACATAGTACTCTGTCAGAGGACATTGGAAGAGCCCAGCGAGAGATCCAAAGTGCAAATCAGAAGATAGCATCACTCAATGAAATGTATAAGCGGTTGCAGGATTACATAACAAGCTTACAACAGTACAATGGAAAACTTCATTCTGAGCTTTCATCAGTTGAAGATGAACTTAAACGCGTAGAGAAAGAGAAGGCTACTGTAGTGGAGAACATCACCATGTTAAGGGGTCAACTCACTGTATCAGTTTCTTCCCAAGAAGAGGCCATAAAACAGAAGGATGCCCTGGCTACAGAAATTGCCTCTCTTAGAGGAGAGTTGCAACAAGTAAGAGATGAGCGAGACCGGCGATTATCTCAAGTACAAACTTTATCTTCTGAATTAGAGAAATTTAAAGAATCTACGAAACAGTCCTCCACTGAATTGGGCAGCTTGACGTTAAAAGCAAATGACCTGGAGGCAAAATGTTCTTTGAAAGATAATCAAATAAAGGCATTGGAAGAGCAGCTAGCAACTGCAGAGAAGAAACTGCAGGTGTCTGATGTATCTGCATTTGAGACAAGGACAGAATTTGTAGGACAACAGAAATTTGTGAATGAATTACAAAGACGCTTAGCAGATGCAGAATATAAACTTATAGAAGGGGAGAGACTGcggaaaaaattacataataccaTTTTGGAGTTAAAAGGGAACATCCGTGTATTCTGTCGAGTGAGGCCTTTATTACCGGATGAAAGTGGTAGCACAGAAGGCAAGATTTTCAGTTATCCAACATCAATGGAAACTTCTGGACGAGCCATTGACGTAGCCCAAAATGGCCAAAAACATTCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAgaagtttttattgaaatttcacAGCTTGTACAAAGCGCTCTTGACGGTTATAAGgTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAAACCTATACAATGATGGGCAGGCCTGGACATCCAGAGGAGAAGGGCCTGATACCTCGTTCATTAgaacaaatatttcaaacaaagcAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAAACGATTCGGGATCTGATATCTACAAACAAATCATCACCTGATGCAACACGCATGGAAAATGGTACTCCTGGAAAACAATATACAATCAAACATGATGCAAATGGAAATACACAAGTTTCTGATCTCACAGTAGTGGATGTTCAGAGTGCTAAAGAGGTtgcatttcttttaaatcaagcTGCAAATAGCAGATCTGTGGGAAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATATGGTGTTAATGAGAGTACTGACCAACAAGTACAAGGTGTTCTGAATCTCATTGATCTTGCGGGTAGCGAGCGTCTTTCAAAGAGTGGATCAACTGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCATTGAGTGATGTTATATTCGCCTTAGCCAAGAAGGAGGACCATGTGCCATTCAGGAACTCAAAGCTTACATATCTGCTTCAGCCTTGCCTAGGTGGAGACTCGAAGACACTAATGTTTGTGAACATATCACCTGATCCTTCTTCAGTTGGTGAGTCACTATGCTCACTCAGGTTTGCATCAAGAGTGAATGCTTGTGAGATTGGAACACCCCGGCGTCAAACCAATGGACGTTCTATAGAGTCTCGCTTGAGCTATTTCTAA 2412 0.3947 MITKTQNRPPLSLTSTPSPPSKSFEGDVLLLDSKGRRVGAEKMVGTPINGRARQAFTVVNGGGLDLGPSSAPPSNAGSDYGVIEFTREDVEALLNEKAKRKDRFNYKERCENMVDYIKRLKVCIRWFQDLEMYYSLEQEKLKNSLELTRQKSIEIELLLKIKEEELNSIITEMRRNCTSLQEKLIKEETEKSAAVESLVKEREARLDIERSHSTLSEDIGRAQREIQSANQKIASLNEMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKATVVENITMLRGQLTVSVSSQEEAIKQKDALATEIASLRGELQQVRDERDRRLSQVQTLSSELEKFKESTKQSSTELGSLTLKANDLEAKCSLKDNQIKALEEQLATAEKKLQVSDVSAFETRTEFVGQQKFVNELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLPDESGSTEGKIFSYPTSMETSGRAIDVAQNGQKHSFTFDKVFTPEASQEEVFIEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTKQSQQPQGWKYEMQVSMLEIYNETIRDLISTNKSSPDATRMENGTPGKQYTIKHDANGNTQVSDLTVVDVQSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSVGESLCSLRFASRVNACEIGTPRRQTNGRSIESRLSYF 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1980 803 ProSitePatterns Kinesin motor domain signature. 682 693 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu3g1980 803 Gene3D - 151 328 - -
Ssu3g1980 803 Coils Coil 212 246 - -
Ssu3g1980 803 Pfam Kinesin motor domain 448 780 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1980 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 780 IPR027417 -
Ssu3g1980 803 CDD KISc_C_terminal 440 784 - -
Ssu3g1980 803 Coils Coil 254 281 - -
Ssu3g1980 803 SMART kinesin_4 440 790 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1980 803 Gene3D Kinesin motor domain 388 784 IPR036961 -
Ssu3g1980 803 Coils Coil 83 103 - -
Ssu3g1980 803 Coils Coil 163 190 - -
Ssu3g1980 803 PANTHER KINESIN-LIKE PROTEIN 40 802 - -
Ssu3g1980 803 Coils Coil 359 393 - -
Ssu3g1980 803 Coils Coil 296 323 - -
Ssu3g1980 803 PRINTS Kinesin heavy chain signature 518 539 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1980 803 PRINTS Kinesin heavy chain signature 652 669 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1980 803 PRINTS Kinesin heavy chain signature 683 701 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1980 803 PRINTS Kinesin heavy chain signature 732 753 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu3g1980 803 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g1980 803 PANTHER KINESIN-LIKE PROTEIN KLP-3 40 802 - -
Ssu3g1980 803 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g1980 803 Coils Coil 408 428 - -
Ssu3g1980 803 ProSiteProfiles Kinesin motor domain profile. 442 782 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1980 Ssu-Chr3 64948440 64954911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1980 414 796 Calmodulin-binding Proteins AT5G65930 38.903 3.23e-78 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1980 3 64948440 64954911 Ssu3g1980 3 64948440 64954911 ECH
Ssu8g1032 8 17701330 17707719 Ssu3g1980 3 64948440 64954911 PCT