Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1978 ATGGGAATTCAGAAACATATGGTTAGCATAAAGGTTAGCTTTGGTGTTCTTTTAGTTCTTCTTCTAGTAGCAGCAGTCAGTTCTacagaaaagaaggaaacacaAGATGGTTTTGTTAGCGAGTTACTTGATCCAGCATCTGGATTGTTAGATGAGCACACGCAGGCAAAGGTCTTATGGAATGATTGCTGGGaagatttatttcatttaatcaaAGAGGTTGAAGATCATGATTTATGCCTCCCACAGGAATTGTCTAGCAGCACCAATAAAATCAGTTCAAAGATTCGGCCATTAGCGCGAGAAGACATCCAAAAATTTATCAATGCTTACTGTCCTCAATTCAAGGAGAACTTTCTTCActgtttgagaaaaaataatcgTCCATTACCTGTTTCAGGAAAAGAGGATGATTCCAAGATTTGGCATGTTGCTTTTATGGGATCACTTTTTTCCCAATCCAGTGTTCCTGAAAGAGATTTTGGTCGTATTTTGCTCCAGCACATATCAGAACCACCTGGTTTGGGCCCTGCAGTTGGATCACCTACACCCAGTTTAACACCATCTCCTGAACCCAGCTCAGCACCATCATCTGAACCCAGTCTGGCCCCATCACCTCTTGCTCCAGCACCTCTAGTTCCTAGAACTCCTCGTCCTTCTTTGTCACCAACATCATTTTTCCCAAAATTGACACCAGCAGCAGCTTCAGAAATTTCTGCTCCTCCATCTTCTGACGTTAACAAACAGGAAGATAAGcatagtaataaaaaaacagTCGTTCTTGCTGTTGTTATAACTGCAGTGGTGACATTTGTAGCTGCAGCACTGCTCTTTTTATGCTGTAGTCGGTTTCGTAAGACTGGCCATGTTAGACTAAATGATGATAGGCCTCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTATTCTTTCGGAAATTCAATAAAAGGGGAGAAACTTGGGTTTCAGTCATCAAGTACAAGTTTAGTACACAATAAGAAGTACTCAGTGCAAGAAAGTCAATCAATAGCTCTTAATGCTACTGCAGCATCACCATTTGAACTGAAACCTCCTCCAGGTAGGGTGGGAACCACCCCTTCTGGAATGCCTCCTTTAAAACCTCCTCCAGGAAGGCTAAACCCTCTTCCTCCTGAGCCACCTTCATTTAGGCCTGCTGGTGATACTGCTCCGGCTGCTACTCCTGTTGTTTCTGTTGCTGCAGCTCCTTCTCCTCATCCTGCACCTCAACAGCCTGCTACTAGTAGCACTCCACCACCACCCCGAGCACCTGCTGGTGCCAAACCTGgcccacctccaccaccactgccagCACTAGCTGGTGCCAAACCTGgcccacctccaccaccactgccagCACTAGCTGGTGCCAAACCTGGTCCTCCTCCACCACCTCCAGCACCAGCTGGTGCCAAATCTAGTCCTCCTCCACCACCTCCAGCACCAGCTGGTGCCAAACCTGGtcctcctcctccaccaccacccCCTGCATCAGCAAGTGCCAAACCTGGtcctcctccaccaccacccCCGGCACCAGCTGGTGCCAAACCCGGTCCTCGTCCACCACCACCTCCTATGAGTGGTGTAGCTCCTCGTCGACCTCCTCCCCCATTTGGCTCAAAGGTCACTCGGCCTTTAGCTAGTGGATCAAAAACTACAGTTGAAGCTGGCGTAGAAGGTGAAGCTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTtggaatcaaatcaaatcaggATCATTCCAGTTTAATGAAGAGATGATAGAGACGCTTTTTGGCTATAATGCTGTCGATAAGAATAATGGTCAAAGACAGAAGGAGTCTTCCTCTCAAGGCCCTTCACCTCAGTTTATCCAGGTCATTGACAAAAAGAAAGCACAAAATTTATTGATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGCGATGCACTTTATGAAGGACATGAGCTGCCCTTGGAATTCCTTCAAACCTTGCTGAAGATGGCACCAACATCAGACGAAGAACTTAAGCTTAGACTTTTTAATGGTGATCTATCTCAACTTGGTCCTGCTGACCGTTTCCTGAAAGCCATGGTTGACATTCCATTTGCATTTGAGCGAATGGAAGCTCTGCTTTTCATGGGCACATTTAAAGAGGAGCTTGCAACTACTGTGGAGTCTTTTGCCAATTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGAATGAATGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTCTCAAATTATCTGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACACTTTGTTGTTCTAGAGATTATCCGCTCTGAGGGCATAAAAGCCGTCCGAAAGGCAAAAGAGAGTCAGAGTTTGTCTAGTATTAAAGCGGATGACCTTCACGGTAGTACTCAAGAAACAGAAGATCGCTACCGTGAAATTGGTCTACAGGTGGTTTCATGTTTGAGCAGTGAACTTGAGAATGTAAAAAAAGCAGCAGTTATAGATGCTGACGGCTTAACAGGAACCACTGCCAAACTCGGCCATGGTCTCATAAAAACACGAGACTTGGTaaacaaaaacatgaaaaacGTGGAGGAAGATAGGGGGTTTTGTGAGACAGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTATGAAACTGCTggaagaggagaagaaaatCATGGCTCTGGTGAAGAGCACTGGCGATTACTTTCATGGGAATGCTGGGAAGGATGAAGGCATACGGTTGTTCATAGTAGTACGAGACTTCTTAGTAATGCTGGATAAGGTATGCAAGGAGGTGAGAGATACACCGAAGAAGCTGGCAAAAACCCTAAAACAAGAGACCCCACGAGGAGCATCTTCCTCTGAAACACGTCCACCACCTGATTTTCGTCAGCGGCTTTTTCCAGCAATTGCCGAAAGGAGGATGGATGACATTAGTTCAGATGATGAGAGTCCATAG 3108 0.4241 MGIQKHMVSIKVSFGVLLVLLLVAAVSSTEKKETQDGFVSELLDPASGLLDEHTQAKVLWNDCWEDLFHLIKEVEDHDLCLPQELSSSTNKISSKIRPLAREDIQKFINAYCPQFKENFLHCLRKNNRPLPVSGKEDDSKIWHVAFMGSLFSQSSVPERDFGRILLQHISEPPGLGPAVGSPTPSLTPSPEPSSAPSSEPSLAPSPLAPAPLVPRTPRPSLSPTSFFPKLTPAAASEISAPPSSDVNKQEDKHSNKKTVVLAVVITAVVTFVAAALLFLCCSRFRKTGHVRLNDDRPLLSLSMSDYSVGPSSYSFGNSIKGEKLGFQSSSTSLVHNKKYSVQESQSIALNATAASPFELKPPPGRVGTTPSGMPPLKPPPGRLNPLPPEPPSFRPAGDTAPAATPVVSVAAAPSPHPAPQQPATSSTPPPPRAPAGAKPGPPPPPLPALAGAKPGPPPPPLPALAGAKPGPPPPPPAPAGAKSSPPPPPPAPAGAKPGPPPPPPPPASASAKPGPPPPPPPAPAGAKPGPRPPPPPMSGVAPRRPPPPFGSKVTRPLASGSKTTVEAGVEGEADAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESSSQGPSPQFIQVIDKKKAQNLLILLRALNVTMEEVCDALYEGHELPLEFLQTLLKMAPTSDEELKLRLFNGDLSQLGPADRFLKAMVDIPFAFERMEALLFMGTFKEELATTVESFANLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAVRKAKESQSLSSIKADDLHGSTQETEDRYREIGLQVVSCLSSELENVKKAAVIDADGLTGTTAKLGHGLIKTRDLVNKNMKNVEEDRGFCETVKSFVQNAEADVMKLLEEEKKIMALVKSTGDYFHGNAGKDEGIRLFIVVRDFLVMLDKVCKEVRDTPKKLAKTLKQETPRGASSSETRPPPDFRQRLFPAIAERRMDDISSDDESP 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 353 573 - -
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 177 218 - -
Ssu3g1978 1035 SMART it6_source 570 990 IPR015425 -
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 415 552 - -
Ssu3g1978 1035 Gene3D Formin, FH2 domain 575 1007 IPR042201 -
Ssu3g1978 1035 Pfam Formin Homology 2 Domain 572 975 IPR015425 -
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 1017 1035 - -
Ssu3g1978 1035 PANTHER FORMIN-RELATED 474 1033 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu3g1978 1035 PANTHER FORMIN-LIKE PROTEIN 1 476 - -
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 172 226 - -
Ssu3g1978 1035 SUPERFAMILY Formin homology 2 domain (FH2 domain) 516 992 - -
Ssu3g1978 1035 PANTHER FORMIN-LIKE PROTEIN 474 1033 - -
Ssu3g1978 1035 PANTHER FORMIN-RELATED 1 476 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 989 1035 - -
Ssu3g1978 1035 MobiDBLite consensus disorder prediction 367 395 - -
Ssu3g1978 1035 ProSiteProfiles Formin homology-2 (FH2) domain profile. 570 1001 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1978 Ssu-Chr3 64899771 64905609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1978 234 393 FH2 protein (formin) Gene Family AT5G54650 42.614 7.08e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1978 - - gmx:100793413 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1978 3 64899771 64905609 Ssu3g1978 3 64899771 64905609 ECH
Ssu8g1034 8 17730879 17737920 Ssu3g1978 3 64899771 64905609 PCT