Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1977 atggagaaagaagagaaaaagaagataatggGAAACATTAAGGATAATATGCCAACAGTGTGGTTCTCTCTGAAGAGGTCTTTACACTGCAAATCTGAGCCATCTGATGTTCATGACCCAAAAACAAGGAAGCACTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCATCTTGACAAGCCACCAAGTTGCAGTCCAAGATCTATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTGATTTTGAGCAACTCAAGGTGTGAGCTAAAGATCACTGGGTATGGAGGGTTCCAAGAGGGGGTTGGCAGTGGTGGCAGCAAtgctggtggtggtggtggaggttcAACTTTTGTGGGGACTTTGAGGCCTGGGACTCCTGGCCCTGGAGGGCACCCCACAATGCACTACTTCAACCCTTCTTTTAGGCCTTCATCCACTCCTCCAAGGAAATCCCCTTATCTTCTATCAGATAAAGAAGGGTCTGGTCCTCATGGGGGTGGACTTCATCCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGGTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCTCATCACCTGTCCAAGCATGCTGTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCCGGACTAGCTGGTTAAAGTCCGAAAACCAGTGTGGTAGAATTGAGAGAGTTTTGAAGGTTCACAACATGCAAAAGACTCTTGCAAGATTTGAAGAGTACAGGGAGATGGTGAAGATCAAAGCCAGCAAGCTCCAGAAGAAGCATCCAAGATGTCTTGCTGATGGGAATGAACTTTTGAGGTTCTATGGCACCACTGTGGCATGCTCTCTTGGCCTCAATGGCTCTTCCAGTCTCTGCCAATCAGAAAAATGCTGTGTTTGCAGAATCATAAGGAATGGTTTTTCAGCCAAGAAGGAGCTCAAGGGTGGCATTGGAGTTTTCACAACCTCCACAAGTGGAAGGGCTTTTGAGTCCATAGAGATTTTTGGTGATGAACCATCACTGAGAAAAGCACTTATAGTGTGCAGGGTAATTGCTGGCAGGGTTCATAGGCCACTTGAGAACATTCAGGAAATGGCGGCACAAACAGGATTTGACTCATTGGCTGGGAAAGTGGGTCTATATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1326 0.4419 MEKEEKKKIMGNIKDNMPTVWFSLKRSLHCKSEPSDVHDPKTRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGSNAGGGGGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRPSSTPPRKSPYLLSDKEGSGPHGGGLHPSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCQSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIFGDEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1977 441 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
Ssu3g1977 441 SUPERFAMILY ADP-ribosylation 232 440 - -
Ssu3g1977 441 MobiDBLite consensus disorder prediction 126 201 - -
Ssu3g1977 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 18 441 - -
Ssu3g1977 441 Gene3D - 221 440 - -
Ssu3g1977 441 PANTHER - 18 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1977 Ssu-Chr3 64889663 64891560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1977 17 441 C2H2 Transcription Factor Family AT5G54630 69.114 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu3g1977 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1977 - - gmx:100787790 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1977 3 64889663 64891560 Ssu3g1977 3 64889663 64891560 ECH