Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1975 ATGCTCACTATAATGAATCAGGCCTATAACAATGAAAAGGAGACGAAACACGTGTCAGTAGGACTGATTATTGGGGTTTCCATAGGTGTGGTTATTGGACTAGTTTTGGCAATTTTTGCATTCTTCTGCCTTAGGTACCATCGGAAGCGTTGTTCACAGATAGGCAATAGCAGTTCTAGAAGGGATGCTACTATACCCATCCGCACAAATGGTGCTGATTCTTGCACCATTCTGtcagactcaaccataggtccAGCATCACCTGTAAAGTCAAGAAGGTATAGCATGCCCTTTTGGCTTGATGGGTTTAAGAAGAGTAACATGGTCCCAGCATCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCTACACACAATTTTACCACAGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGCGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGcttgtatatgtatacatgagTAAGGGTAGCTTGGCATCCCACTTGTATAGTGATGAGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATATAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTATTGGACCAATCCATGCGGGCAAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGAACATTCACGAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGAAACCCGCAGCAGGGTCTAATGGAATATGTTGAGCTTGCAGCAATGAATACCGAGGGAAAAGTTGGCTGGGAGGAAATTGTGGATTCTCGGCTTCAGGGAAACTTTGATGTCCAAGAACTGAATGAACTGGCAGCACTTGCTTACAAATGCATCAACCGTGCCCCAAGTAAACGTCCTTCTACGAGGGACATAATGCAAGTGTTAACAAATTTCCTTCAATCAAGGCACCATGGGAATCATCACAAAAATTCCTTGTCAGCCACAGACGAAGTTTTCATTGATCCTGATCAGCCAGAGACCAAGATTTGTGTTACTGATCACATGAGAGAAGAATCTACGGAGAGTGAAGCAGAGGTGTATGACGTGTAG 1332 0.4174 MLTIMNQAYNNEKETKHVSVGLIIGVSIGVVIGLVLAIFAFFCLRYHRKRCSQIGNSSSRRDATIPIRTNGADSCTILSDSTIGPASPVKSRRYSMPFWLDGFKKSNMVPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMSTGATVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSDENEALCWDLRVHIALDIARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLQGNFDVQELNELAALAYKCINRAPSKRPSTRDIMQVLTNFLQSRHHGNHHKNSLSATDEVFIDPDQPETKICVTDHMREESTESEAEVYDV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1975 443 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 19 410 - -
Ssu3g1975 443 PANTHER OS01G0253100 PROTEIN 19 410 IPR045271 GO:0004714|GO:0006468
Ssu3g1975 443 SUPERFAMILY Protein kinase-like (PK-like) 105 389 IPR011009 -
Ssu3g1975 443 Pfam Protein tyrosine and serine/threonine kinase 129 389 IPR001245 GO:0004672|GO:0006468
Ssu3g1975 443 SMART serkin_6 127 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1975 443 Gene3D Phosphorylase Kinase; domain 1 102 202 - -
Ssu3g1975 443 CDD STKc_IRAK 133 392 - -
Ssu3g1975 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Ssu3g1975 443 ProSiteProfiles Protein kinase domain profile. 127 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1975 443 Gene3D Transferase(Phosphotransferase) domain 1 203 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1975 Ssu-Chr3 64851359 64855095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1975 113 399 Receptor kinase-like Gene Family AT3G19300 43.345 1.25e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Ssu3g1975 PK_Tyr_Ser-Thr 2.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1975 - - gmx:100786710 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1975 3 64851359 64855095 Ssu3g1975 3 64851359 64855095 ECH
Ssu8g1039 8 17828306 17832328 Ssu3g1975 3 64851359 64855095 PCT