Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1974 ATGGACTTGAATCAGTTTTTCAGTGTGACTAGTTCGGCAGGAATTCCTTGCACATCATCTTATTCTCCTATTTCACCAATACCCAACCGGTTGCTTGGATCCTTGAAACTTGACATAGGAAACTCTCCTAATTCAGCCCTTTCTACTCATTTTGACTCTGATACACTTTCTTCTGCATTAAGTGACAGCCAGGAACAGCACACCTCAGGGGAAATTCACTCTGGTGTCAACTCTTCTGGTAACTCTTTGCAGGAAAACAGTCATTATTTGCATAGGCCAGTCTCATCTGTGGACCATCTCCAAGACGATTTTCATCTATCTACTAGGAGCTTTCTTCCACAGGATGCAAGTTATGGCCATGAAACCAGACATGCATTGCTGGAATTAGAAACTGCTTTGATGGCACCTGATGGTGAAGATCAAGTCACCACATCAAGCACTGCTTTGGGTGTTAGCAGCAGCCCAACAACATCTGGTCAAAGAAATAGGTCCTGGAGCTGTGAGGGCCAGTCAAGTGATGTTGCACGTGTAAAGAAGCGTCACAAATCAATGGAGGAAGTATCGCTACAAGGGTTCCCATCAAGCAATTTGAAACAATTGCTGATTGTTTGTGCCAAAGCCTTGTCTGAAAACAGCATGAAAGATTTTGATCAATTGATAGAAAAGGCTAGAAGTGTTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTTGGTGCTTATTTGGTAGAAGGGCTAGTTGCAAGGAAGGAGGCATCAGGGAATAACATCTACCGTGCCCTTAGGTGCAGAGAGCCTGAGGGCAAAGACTTACTCTCTTACATGCAGATACTGTATGAAATCTGTCCCTACTTAAAATTCGGTTACATGGCTGCCAATGGAGCAATTGCTGAAGCTTGTAGGAATGAAGACCGCATTCACATCATAGACTTCCAGATTGGTCAGGGAACTCAATGGATGACACTTCTTCAAGCTCTTGCAGCAAGACCTAGTGGAGCTCCTCATGTGCGGATCACAGGGATTGATGATCCCCTTTCTAAATATGTTCGTGGTGATGGATTGGAAGCCGTTGGGAAAAGGCTGGCTGCGATCTCTCAGACATTTAACATCCCAGTTGAGTTCCATGGTGTGCCTGTTTTAGCTCCGGACGTGACAAAAGACATGCTTGATGTTAGGCCTGGTGAGGCTTTGGCTGTGAACTTTCCTTTGCAACTCCATCACACGGCTGATGAGAGTGTTGATATGAGTAATCCAAGGGATGGACTTTTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACATTGGTTGAGCAAGAGTCAAACACAAATACCACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGTCAATGTTTGAGTCCATTGATGTGTCTCTTCCAAGAAAGAGCAAGGAGCGGATTAATGTGGAGCAACATTGTCTGGCTCGGGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAACTGTTAGGCAAGTGGAAGTCCAGGTTGACAATGGCTGGCTTTTGTCAATATCCTTTGAGTTCTTATGTGAATTCTGTCATAAGAAGCCTGCTGAGGTGCTATTCAGAACATTATAATCTTGTGGAGAAGGATGGGGCCATGTTGTTGGGATGGAAGGACAGAAATTTGATTTCAGCTTCAGCTTGGCATTGA 1704 0.4419 MDLNQFFSVTSSAGIPCTSSYSPISPIPNRLLGSLKLDIGNSPNSALSTHFDSDTLSSALSDSQEQHTSGEIHSGVNSSGNSLQENSHYLHRPVSSVDHLQDDFHLSTRSFLPQDASYGHETRHALLELETALMAPDGEDQVTTSSTALGVSSSPTTSGQRNRSWSCEGQSSDVARVKKRHKSMEEVSLQGFPSSNLKQLLIVCAKALSENSMKDFDQLIEKARSVVSITGEPIQRLGAYLVEGLVARKEASGNNIYRALRCREPEGKDLLSYMQILYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIGQGTQWMTLLQALAARPSGAPHVRITGIDDPLSKYVRGDGLEAVGKRLAAISQTFNIPVEFHGVPVLAPDVTKDMLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLSMFESIDVSLPRKSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFCQYPLSSYVNSVIRSLLRCYSEHYNLVEKDGAMLLGWKDRNLISASAWH 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1974 567 MobiDBLite consensus disorder prediction 57 86 - -
Ssu3g1974 567 Pfam GRAS domain family 197 566 IPR005202 -
Ssu3g1974 567 MobiDBLite consensus disorder prediction 139 172 - -
Ssu3g1974 567 ProSiteProfiles GRAS family profile. 188 567 IPR005202 -
Ssu3g1974 567 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 567 - -
Ssu3g1974 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 567 IPR005202 -
Ssu3g1974 567 MobiDBLite consensus disorder prediction 139 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1974 Ssu-Chr3 64793483 64795186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1974 120 566 GRAS Transcription Factor Family AT5G48150 56.696 1.50e-180 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g1974 GRAS 6.3e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1974 - - gmx:100775665 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1974 3 64793483 64795186 Ssu3g1974 3 64793483 64795186 ECH
Ssu8g1040 8 17880202 17881803 Ssu3g1974 3 64793483 64795186 PCT