Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1970 ATGGTGAGAACCCCGTGTTCTGACAAAAATAATGGACTGAAGAAAGGAGCATGGACACCAGAGGAAGACAAGaagttaattgattatattactAGATATGGTCACTGGAATTGGCGCCTACTCCCCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGGTGAATTACCTAAGGCCAGACCTCAAAAGAGGGGACTACACTCAAGAAGAGGAGGAAACTATTATCAAGCTGCACCGAGATCTTGGTAACAGATGGTCTGCCATTGCTGCTCGGATGCCAGGAAGAACggacaatgaaataaaaaactactggAACACCAATCTCAAGAACCGCTCACAACAGGACTCAGTCACAAAAGCTCAAGTTTCCAAGTCAAAGGATCAATCCCCAACCGAACCAACTGCGAACCCTTTCCAAAGCTTTCGTACCACACAAGATTCCTCTCCATTTTCCCAGCATTCATCCTCCTCCACAAGCATAGAGTATACCACTGTTACCAGCAACCAAAATCTAGCTCTGGAAGATGAATTTGCCTTTTGGGATGCAGAGACAGATCTTATGAGTGGAAACTTCTGGTTAGAACCGTATATACCTGATATCACCTACGTCCCTAGTGAACCCGAGTACTTTAGCCCAGTCTTTGATGCAGAACTTTGGAGAGATGATGACCGTATATGCTTTCATACCACACAAGACTCCTTCCCATTTTCCCAGCAGTCATCCTCCTCCACAAGCAAAGAGTATACCACTGTTACTAGCAATAACAATGTGGTTCTAGAGGATGAATTTACCTTATGGAATGCAGATCTAGACACTAAACGTAAAGCATCAACAATGGAAGAACTCAATTTGGATTCTTAA 876 0.4247 MVRTPCSDKNNGLKKGAWTPEEDKKLIDYITRYGHWNWRLLPKFAGLARCGKSCRLRWVNYLRPDLKRGDYTQEEEETIIKLHRDLGNRWSAIAARMPGRTDNEIKNYWNTNLKNRSQQDSVTKAQVSKSKDQSPTEPTANPFQSFRTTQDSSPFSQHSSSSTSIEYTTVTSNQNLALEDEFAFWDAETDLMSGNFWLEPYIPDITYVPSEPEYFSPVFDAELWRDDDRICFHTTQDSFPFSQQSSSSTSKEYTTVTSNNNVVLEDEFTLWNADLDTKRKASTMEELNLDS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1970 291 CDD SANT 71 113 IPR001005 -
Ssu3g1970 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 263 - -
Ssu3g1970 291 Gene3D - 14 67 - -
Ssu3g1970 291 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 263 - -
Ssu3g1970 291 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ssu3g1970 291 MobiDBLite consensus disorder prediction 116 162 - -
Ssu3g1970 291 SMART sant 14 64 IPR001005 -
Ssu3g1970 291 SMART sant 67 115 IPR001005 -
Ssu3g1970 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu3g1970 291 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu3g1970 291 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ssu3g1970 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu3g1970 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ssu3g1970 291 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Ssu3g1970 291 Gene3D - 70 140 - -
Ssu3g1970 291 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1970 Ssu-Chr3 64199032 64202769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1970 1 116 MYB Transcription Factor Family AT4G05100 73.276 2.02e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g1970 Myb_DNA-binding 1.8e-13 CL0123