Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1967 ATGGCGAGAACCCCGGGCTTAAACAAAAATGGACAGAAGAAAGGAACATGGACCCCAGAGGAAGACaagaaattaattgattatgttactAGATATGGCCACTGGAATTGGAGCCTACTTCTCAAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACTTAAGGCCACACCTCAAAAGAGGGAACTACACTCAAGAAGAGGAGGAAACTATTATCAAGCTGCACCGAGATCTTGGTAACAGATGGTCCGCCATTGCAGCTCGGTTGCCAGGAAGAACGGAcaatgagataaaaaattacTGGAATACCAACCTCAAGAACCGGTCTGAACAGGACTCAAAGGACCAATCCCCAACTGAACCAATTTCAAATCCTTTCCAAAGCTTTCATACCACGCAAGATTCCTCTCCATTCTCCCAGCATTCATCCTCTTCCACAAGCACAGAGGATACCATTGTTACCGGCAGGGAAAATCTGGTTCTGGAAGATGAATTTGCCTTTTGGGATGCAGACACGGATCTTATGAGTGGAAACTTCTCGTTAGAACCGTATATGCTTGATATTTCCTACGTCGCCCCTAGCGAACCCGAGTACTTTAGCCCAGTCTTTGATGCAAAACTTTGGAGTCATGATAAAACCACGCAAGTTTCCTCCCCATTTTCCCAGCATTCATCCTCCTTCACAAGCACAGAGTTTACCACTGTTACCAGCAACGAAAATCTAGTTCTGGAAGATGAATTTGCCTTTTGGGATGCAGACACGGATCTTATGAGTGGAATAGAACCAAGTGTACATGATATTTCCTAG 828 0.436 MARTPGLNKNGQKKGTWTPEEDKKLIDYVTRYGHWNWSLLLKFAGLARCGKSCRLRWLNYLRPHLKRGNYTQEEEETIIKLHRDLGNRWSAIAARLPGRTDNEIKNYWNTNLKNRSEQDSKDQSPTEPISNPFQSFHTTQDSSPFSQHSSSSTSTEDTIVTGRENLVLEDEFAFWDADTDLMSGNFSLEPYMLDISYVAPSEPEYFSPVFDAKLWSHDKTTQVSSPFSQHSSSFTSTEFTTVTSNENLVLEDEFAFWDADTDLMSGIEPSVHDIS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1967 275 MobiDBLite consensus disorder prediction 123 158 - -
Ssu3g1967 275 CDD SANT 69 112 IPR001005 -
Ssu3g1967 275 CDD SANT 16 61 IPR001005 -
Ssu3g1967 275 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu3g1967 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Ssu3g1967 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g1967 275 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu3g1967 275 SMART sant 66 114 IPR001005 -
Ssu3g1967 275 SMART sant 13 63 IPR001005 -
Ssu3g1967 275 Gene3D - 68 135 - -
Ssu3g1967 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g1967 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g1967 275 MobiDBLite consensus disorder prediction 110 158 - -
Ssu3g1967 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g1967 275 Gene3D - 6 66 - -
Ssu3g1967 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g1967 275 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1967 Ssu-Chr3 63152858 63156289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1967 1 154 MYB Transcription Factor Family AT2G31180 55.000 4.62e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g1967 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1967 K09422 - gmx:100778518 336.65