Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1964 ATGAGAGTTCCTCGAATGATAGTGACACTAGCTATTGAAGCCAATGAGAATTTATTGACAGAACATAACAATGAAAGATATGTAAATGATCTGGATATCCCATTGTTTGATCTGCCAACAATTGCGACTGCCACTAATGACTTCTCCATAGCAAATAAGATAGGACAAGGTGGTTTCGGACCTGTATTCAGGGGATTGTTAGTGAATGGACAAGAAATTGCTGTGAAGACTCTATCAAGTAGCTCAGGACAAGGACTGACAGAGTTCCTAAATGAAGTAAAATCGATTGCAAAACTTCAGCATCGAAATCTTGCATGGAAAATGTGGAAAGGGAACAGAGCTATAGAACTGATCGACCCAAATGTAGGGGACTCGTACATTGTATCAGAAGTATTGCGCTGCATGCATGTTAGTCTCTTGTGCGTGCAGCAGCACCCAGATGATAGGCCTACCATGCGTTCTGTGATTCTAATGTTGGGGAGTGAGATGGAATTGGTTGAGCCTAAAGAACCTGGTTTCATTTCAAACTATATTTCGACTGAagtaaatttacaaataaatcaaaaggATAAGAGTTCAACCAACGAAATGACCATTTCCTTAGTAAATCCACGATGA 618 0.39 MRVPRMIVTLAIEANENLLTEHNNERYVNDLDIPLFDLPTIATATNDFSIANKIGQGGFGPVFRGLLVNGQEIAVKTLSSSSGQGLTEFLNEVKSIAKLQHRNLAWKMWKGNRAIELIDPNVGDSYIVSEVLRCMHVSLLCVQQHPDDRPTMRSVILMLGSEMELVEPKEPGFISNYISTEVNLQINQKDKSSTNEMTISLVNPR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1964 205 ProSiteProfiles Protein kinase domain profile. 48 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1964 205 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 104 - -
Ssu3g1964 205 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 105 203 - -
Ssu3g1964 205 SUPERFAMILY Protein kinase-like (PK-like) 33 104 IPR011009 -
Ssu3g1964 205 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
Ssu3g1964 205 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 105 203 - -
Ssu3g1964 205 Pfam Protein tyrosine and serine/threonine kinase 50 104 IPR001245 GO:0004672|GO:0006468
Ssu3g1964 205 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1964 Ssu-Chr3 62861685 62866608 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1964 36 104 Receptor kinase-like Gene Family AT4G04500 63.768 2.09e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1964 PK_Tyr_Ser-Thr 1.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1964 - - adu:107459409 163.31