Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1960 ATGACCGAGTTTATGACAGAAATAAAACTGATTGCAAAGCTTCAACACCGAAATGTTGTAAAGCTCCTTGGCTGTTGCTTTCGAGGACAAGAAAAACTAATAGTATATGAGTACATGGTTAATGGCAGCTTAGACTCCTTCATTTTTGatcaaatgaAATGTAGATTACTGGATTGGCCCCAACGCTTCCACATAATATTTGGAATGGCTAGGGGACTATTGTATCTTCATCAGGATTCCCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGAAAAGTTATATCCAAAAATATCAGATTTTGGAATGGCTAAAGCTTTCGGAGGAGACCAAACTGAAGGAAACACAAACAGAGTAGTTGGGACTTACGGATACATGGCCCCAGAGTATGCTGTTGATGGACTATATTCGATCAAATCTGACGTTTTCAGCTTTGGTATTTTACTGTTGGAGATTGTAAGTGGGAACAGAAATAGAGCTCTTTCTCATGGAAACCGGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGATAGAGCATAATGCTTTACAGTTGATTGACTCAAGCATAAAGGACTCATGTGTTATCCCAGAAGTAATGCGATGCATCCATGTTAGTCTCTTGTGCGTGCAACAATACCCGGAGGATAGGCCAACCATGACCTCGGTAATTCAAATGTTAGGGAGTGAAATGGAACTGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGATTTCAGTTGAAGGAAATTTAAGCACCAATCTGAACCAAATGACTTCAAATGATGAATTAACCATTACCTCATTAAGTGGCCGtgTACAGAATGTTAATGACATCTTGTTCAACAATAGAGTTCGAAAAAGATACATGTCTTAG 900 0.3867 MTEFMTEIKLIAKLQHRNVVKLLGCCFRGQEKLIVYEYMVNGSLDSFIFDQMKCRLLDWPQRFHIIFGMARGLLYLHQDSRLRIIHRDLKASNVLLDEKLYPKISDFGMAKAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLYSIKSDVFSFGILLLEIVSGNRNRALSHGNRTLNLVGYAWTLWIEHNALQLIDSSIKDSCVIPEVMRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPRRISVEGNLSTNLNQMTSNDELTITSLSGRVQNVNDILFNNRVRKRYMS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1960 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Ssu3g1960 299 Pfam Protein tyrosine and serine/threonine kinase 2 234 IPR001245 GO:0004672|GO:0006468
Ssu3g1960 299 SMART serkin_6 2 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1960 299 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Ssu3g1960 299 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 279 - -
Ssu3g1960 299 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1960 299 Gene3D Transferase(Phosphotransferase) domain 1 39 244 - -
Ssu3g1960 299 SUPERFAMILY Protein kinase-like (PK-like) 3 250 IPR011009 -
Ssu3g1960 299 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1960 Ssu-Chr3 62630456 62631866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1960 3 280 Receptor kinase-like Gene Family AT3G45860 52.797 1.67e-101 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1960 PK_Tyr_Ser-Thr 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1960 - - gmx:100807748 497.278