Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1958 ATGAAGTTTAGTCTTTTTCTGATGAGTATCATAGTTTATATACTGTTTGTCCCTTCTCTCATAGTTTTCATAGCAGCGGACATTTCATCCTTTGATCAGTCCCAGTCCTTCAGTTATGGAAAGACCATAGTTTCTTCCCCACGTGGAATGTTTGAGCTTGGTTTCTTCAACATTGGAAATGCCAAGAAAATCTACCTCGGGATTCGGTACAAGAACATCCCACTTCAAAACGTTATTTGGGTTGCAAATGGTGGCAACCCAATCAATGATTCCTCTGCCATCTTGAAACTAAACAGTTCGGGCAATTTGGTCCTTACACACAACAACGCGGTTGTTTGGTGCACAAGTTCTCCAAAAGCAGCACAGAATCCAGTGGCAGAGCTCTTGGATTCTGGCAATCTTGTAATAAGGGATGAGAAAGAAGCAAATCCAGAGGCATATCTATGGCAAAGCTTTGATTACCCATCTAATACAATGCTGGCAGGAATGAGGGTAGGATGGGACCTCAAAAGAAATCTTAGTATTCGCCAGATAGCTTGGAAGAGTGATGATGATCCAACCCCAGGAGACTTATCTTGGGGTATTACTCTGCACAACTATCCTGAGATCTATATGATGAAAGGAACCAAAAAGTACCACAGACTAGGACCATGGAATGGGGTGCGCTTCAGTGGCATGCCAGAAATGAAACCTAATCCGGTTTACGATTACGAGTTTGTCTCCAACAAGGAAGAGGTTTTCTACACATGGACCCTCCAGCAAACTAGTTTAATAGCAAAAGCGGTACTTAACCAAACCACACAAGAACGTCTTCGTTATGTATGGTCAGAGACAGATAAATCATGGATGTTTTATGCAAAGTTGCCAGGAGACTATTGTGACCATTATGGCGTTTGTGGAGCCAATGCTTATTGCAGCTCTACTGCATCACCAATGTGTGAGTGCTTAGAAGGGTTCAAGCCTAAGTATCCTGAGAAATGGAACTCAATGGACTGGTCCCAAGGATGTGTCCTTAAACATCCATTGAATTGCAAGTATGATGGGTTTCTCCTTGTGGAAGGCTTGAAAGTGCCAGATACAAAAGATACGCTTGTGGATGAGACTATTGATCTAGAGCAATGTAGAACCAAGTGCTTGAATGTTTGTTCTTGCATGGCctatacaaattcaaatataaaaggaGCAGGCAGTGGTTGTGTTATATGGTTTGAAGATTTACTTGACATCAAACAGTATTCAGTTCCTGAAAATGGGCAGGGTCTATATATAAGGTTGCCTGCTTCAGAATTagAGGCTCTCAGGCACAAGagctctaaaataaaattagtagcCATCATCACTGCTGTTTCAGGAATGCTTTTACTcggtatttattttatctacagAATCTGGAGGAGCATTAATGAGAAGTCAAAGGCAAGAAATAACTATGAAAGATACGTGGATGATTTGGATCTCCCATTGCTTGATTTGTCAATAATTATGGCTGCCACAAATAATTTCTCAGACGTGAACAAGATTGGAGAAGGTGGTTTTGGACCAGTATATTGGGGAAAATTAGCCAGTGGAGTAGAAATTGCTGTAAAGAGACTTTCAAAGAGCTCCGGACAAGGAATGACCGAGTTTGTAAATGAAGTAAAGCTGATTGCAAAACTTCAGCACCGAAATCTTGTAAAACTTCTAGGCTGTTGCATtcagaaacaagaaaaaatattagtttatgaatACATGGCTAACGGCAGCCTAGATTACTTCATTTTTGATCATACCAAAGGTAAAGCACTTGACTGGCAAAAACGCTTTTGCATAATTTGTGGAATTGCTCGGGGGCTTATGTATCTTCATCAAGATTCCCGACTAAGGATTGTCCATAGAGATCTCAAATTAAGTAATGTTTTACTAGATGATGATTTCAATCCAAAAATATCAGATTTTGGAATGGCTAGAACTGTTGGAGGAGAGGAGATTGAAggaaacacaaataaaatagttgGGACATTTGGGTACATGGCACCAGAGTATGCTGTTGATGGACAATTTTCTGTAAAATCTGATGTCTTCAGCTTTGGTATTTTACTCATGGAGATAATATGtgggaagaaaaatagaggacATAATCGTGGAAAGCAATCCCTTAACCTTGTTGATCATGCATGGACACACTGGAAATCGGGCAGGACTTTAGAAATAATTGACCCAAACTTTGAGGATTCATGCATTGCATCTGAAATCATTCGTTGCATTCATGTTGGGCTGTTGTGCGTGCAAAAATACCCAGAGCATAGGCCTACCATGACCTCAGTAGTTCTAATGTTGGGGAGTAAGATGGAATTGGAAGAGCCTAAACAGCCGGGTATTTTCACGAAGAAGGAACCTATTGAAGCAAATTCAAGCGCAAGTAGTTCAACCAATGCAATGACCATAACCTTAAGTGCTCGATGA 2442 0.3878 MKFSLFLMSIIVYILFVPSLIVFIAADISSFDQSQSFSYGKTIVSSPRGMFELGFFNIGNAKKIYLGIRYKNIPLQNVIWVANGGNPINDSSAILKLNSSGNLVLTHNNAVVWCTSSPKAAQNPVAELLDSGNLVIRDEKEANPEAYLWQSFDYPSNTMLAGMRVGWDLKRNLSIRQIAWKSDDDPTPGDLSWGITLHNYPEIYMMKGTKKYHRLGPWNGVRFSGMPEMKPNPVYDYEFVSNKEEVFYTWTLQQTSLIAKAVLNQTTQERLRYVWSETDKSWMFYAKLPGDYCDHYGVCGANAYCSSTASPMCECLEGFKPKYPEKWNSMDWSQGCVLKHPLNCKYDGFLLVEGLKVPDTKDTLVDETIDLEQCRTKCLNVCSCMAYTNSNIKGAGSGCVIWFEDLLDIKQYSVPENGQGLYIRLPASELEALRHKSSKIKLVAIITAVSGMLLLGIYFIYRIWRSINEKSKARNNYERYVDDLDLPLLDLSIIMAATNNFSDVNKIGEGGFGPVYWGKLASGVEIAVKRLSKSSGQGMTEFVNEVKLIAKLQHRNLVKLLGCCIQKQEKILVYEYMANGSLDYFIFDHTKGKALDWQKRFCIICGIARGLMYLHQDSRLRIVHRDLKLSNVLLDDDFNPKISDFGMARTVGGEEIEGNTNKIVGTFGYMAPEYAVDGQFSVKSDVFSFGILLMEIICGKKNRGHNRGKQSLNLVDHAWTHWKSGRTLEIIDPNFEDSCIASEIIRCIHVGLLCVQKYPEHRPTMTSVVLMLGSKMELEEPKQPGIFTKKEPIEANSSASSSTNAMTITLSAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1958 813 ProSiteProfiles Protein kinase domain profile. 501 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1958 813 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Ssu3g1958 813 CDD PAN_AP_plant 340 426 - -
Ssu3g1958 813 Gene3D Phosphorylase Kinase; domain 1 463 576 - -
Ssu3g1958 813 Gene3D Transferase(Phosphotransferase) domain 1 577 790 - -
Ssu3g1958 813 Pfam S-locus glycoprotein domain 214 322 IPR000858 GO:0048544
Ssu3g1958 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Ssu3g1958 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 186 IPR036426 -
Ssu3g1958 813 Pfam D-mannose binding lectin 78 181 IPR001480 -
Ssu3g1958 813 MobiDBLite consensus disorder prediction 793 813 - -
Ssu3g1958 813 CDD STKc_IRAK 507 772 - -
Ssu3g1958 813 SMART ntp_6 344 425 IPR003609 -
Ssu3g1958 813 CDD B_lectin 40 155 IPR001480 -
Ssu3g1958 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 811 - -
Ssu3g1958 813 SMART blect_4 34 155 IPR001480 -
Ssu3g1958 813 Pfam PAN-like domain 344 409 IPR003609 -
Ssu3g1958 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Ssu3g1958 813 ProSiteProfiles PAN/Apple domain profile. 344 426 IPR003609 -
Ssu3g1958 813 Pfam Protein tyrosine and serine/threonine kinase 505 770 IPR001245 GO:0004672|GO:0006468
Ssu3g1958 813 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1958 813 SUPERFAMILY Protein kinase-like (PK-like) 488 780 IPR011009 -
Ssu3g1958 813 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Ssu3g1958 813 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 37 811 - -
Ssu3g1958 813 Gene3D - 23 152 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1958 Ssu-Chr3 62554751 62562616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1958 437 786 Receptor kinase-like Gene Family AT4G23230 53.258 4.78e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1958 PK_Tyr_Ser-Thr 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1958 - - gmx:100808807 1370.53