Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1948 ATGGCGAGAACCCCGGGCTTAAACAAAAATGGACAGAAGAAAGGAACATGGACCCCAGAGGAAGACaagaaattaattgattatgttactAGATATGGCCACTGGAATTGGAGCTTACTTCCCAAGTTTGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACTTAAGGCCAAACCTCAAAAGAGGGAACTACACTCAAGAAGAGGAGGAAACTATTATCAAGCTGCACCGAAATCTGGGTAGCAGATGGTCTGCCATTGCAGCTCGGCTGCCAGGAAGAACGGACAACGGAATCAAAAACTATTGGAACACCAACCTCAAGAACCGGTCACAACAGGACTCAAAAGCTCAGGTTTTCAAGTCAAAGGACCAATCCCCAACTGAACCAACTGCAAATCCTTTCCAAAGCTTTCATACCACGCAAGATTCCTCACCATTTTTCAACCATTCATCCTCCTCCACAAGCATAGAGTATACCACTGTTACCGGCAACGAAAATCAGGCTCTGGAAGAGTATACCAGTGTTACCAACAATGAAAATCTGGTTCTAGAACATGAATCTGCCTTTGGGGATGAAGACACCGATCTTATGAATGGAAACTTCTCATTAGAACCATATATGCTTGATATTTCCTACGTCCCTAGCGAACCGGAGTACTTTAGCCCAGTCTTTGATGCAGAACTTTGGAGTCATGATAACACCACACAAGATTCCTCCCCATTTTCCCAGCATTCATCCAACTCCACGAGCCCCGAGTATACCACTATTCACGGCAACGAAAATCTGGTTCTGGAAGAGTATACCACTGTGCCCCGCAAAGAAAATTTGGTTCTGGAAGATGAATTTTCCTTTTGGGATTTAGAGACAGATCTTATGAGTGAAAACTTCTGGTTAGAACCGTATATACTTGATATTTCCTACATCCCTAGTGAACCTAAGTACTTTAGCCTAGTCTTTGACGCAGAACATTGGAGTCATGATAACACCACGCAAGATTCTTCCCCATTTTCCCACCATTCATCCTTCTCCACAAGCACCGAGAATAGCACTGTTACCAGCAACAAAAATCTGGTTCTGGAAGATGAATTTTCCTTTTGGGATGCAGGCACGGAACTTACGAGTGAAAACTTCTCGTTAGAACCGTATATACCTGATATTTCCTACGTCCCTAGTGAACCCGAGTACTTTAGCCCAATCTTCAACGCAGAACTTTGCAGTCATGATAACCGTACATGTTTTCATACGACGCAAGACTCCTTCCCATTTTCCCAGCATTCATCCTCCTCCACAAGCAAAGGGTATATCACTGTTCCCAGCAACGACAATGTGGCCCTGGAAGATGAATTTGTCTTATGGGATGCAGACGTCCAAACTGCAAGAACCCAAATTGGAATGTAA 1416 0.4357 MARTPGLNKNGQKKGTWTPEEDKKLIDYVTRYGHWNWSLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYTQEEEETIIKLHRNLGSRWSAIAARLPGRTDNGIKNYWNTNLKNRSQQDSKAQVFKSKDQSPTEPTANPFQSFHTTQDSSPFFNHSSSSTSIEYTTVTGNENQALEEYTSVTNNENLVLEHESAFGDEDTDLMNGNFSLEPYMLDISYVPSEPEYFSPVFDAELWSHDNTTQDSSPFSQHSSNSTSPEYTTIHGNENLVLEEYTTVPRKENLVLEDEFSFWDLETDLMSENFWLEPYILDISYIPSEPKYFSLVFDAEHWSHDNTTQDSSPFSHHSSFSTSTENSTVTSNKNLVLEDEFSFWDAGTELTSENFSLEPYIPDISYVPSEPEYFSPIFNAELCSHDNRTCFHTTQDSFPFSQHSSSSTSKGYITVPSNDNVALEDEFVLWDADVQTARTQIGM 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1948 471 CDD SANT 69 112 IPR001005 -
Ssu3g1948 471 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu3g1948 471 CDD SANT 16 61 IPR001005 -
Ssu3g1948 471 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Ssu3g1948 471 Gene3D - 6 66 - -
Ssu3g1948 471 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu3g1948 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ssu3g1948 471 MobiDBLite consensus disorder prediction 336 355 - -
Ssu3g1948 471 MobiDBLite consensus disorder prediction 111 147 - -
Ssu3g1948 471 Gene3D - 69 138 - -
Ssu3g1948 471 MobiDBLite consensus disorder prediction 240 259 - -
Ssu3g1948 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu3g1948 471 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g1948 471 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu3g1948 471 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g1948 471 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 248 - -
Ssu3g1948 471 SMART sant 66 114 IPR001005 -
Ssu3g1948 471 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1948 Ssu-Chr3 62060559 62064929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1948 1 115 MYB Transcription Factor Family AT4G21440 66.957 4.08e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g1948 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1948 K09422 - gmx:100778518 338.961