Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1941 ATGTGTATACTCATATTGAAACTCCTATACCCCCCAAAAGAACTCAAGCCCACTAATCTCGGTGGCGGCGCCGCGCTTTTTGCGGCGATTTTTCTGCACAAACTCAgcctcctcttcttctccctCTTTCCCCTTCGTTCCTCCGACGCCTCCGGGCGCCACCCCCCGCCCACCCGACCGACGGCGGAGCCCAACACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACTACAGAAAGGCTCCGGGAAGAATTTTCAAAGTTTGGTGAAATTGTTCATGCGAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAGGGATTTGGCTTTGTGCAATACACTACAATAGAAGAGGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCACCACCGGGACAACATGTAAATAACAATACTCCTCCGTATGGCCGGCAGTGA 489 0.4888 MCILILKLLYPPKELKPTNLGGGAALFAAIFLHKLSLLFFSLFPLRSSDASGRHPPPTRPTAEPNTNLFVSGLSKRTTTERLREEFSKFGEIVHARVVTDRVSGYSKGFGFVQYTTIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQHVNNNTPPYGRQ 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1941 162 SMART rrm1_1 67 140 IPR000504 GO:0003723
Ssu3g1941 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Ssu3g1941 162 Gene3D - 44 154 IPR012677 -
Ssu3g1941 162 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 50 161 - -
Ssu3g1941 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Ssu3g1941 162 SUPERFAMILY RNA-binding domain, RBD 57 160 IPR035979 GO:0003676
Ssu3g1941 162 PANTHER TRANSFORMER-2-RELATED 50 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1941 Ssu-Chr3 61816499 61819290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1941 67 162 Eukaryotic Initiation Factors Gene Family AT1G34140 35.354 8.94e-12 60.1