Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1935 ATGTTGGCTGGGATGAAGATTGGATGGGACTTTAAAAGGAAACTAAATAGAAGTCTCATAGCTTGGAAGAGCGGTGATGATCCAACCCCAGGAGACTTATCATGGGGTATTGTGCTGCATCCCTATCCTGAGATCTATATGATGAAGGGAACTAACAAGTACCACAGACTTGGACCATGGAATGGGTTGCGTTTCAGTGGCATGGCAGAAATGAGGCCTAATCCAGTTTTCAATTACAAGTTTGTCTCCAACAAGGATGAGGTTTCTTACATGTGGACCTTGCAGACTAGCTTAATAACAAAAGTGGTGCTTAACCAAACCACAGAAGATCGTCCTCGCTATGTGTGGTCCGACGCCGATAAAACATGGAACTTTTATTCAACCATGCCAATAGAGTACTGTGACCATTATGGCTTTTGTGGGGCCAATTCATTTTGCAGCACCACCGCATCACCAATGTGTGAGTGTTTAAAAGGTTTCAAGCCTAAGTCTCCTGAAAAATGGAACTCAATGGTCTGGACCCAAGGATGTGTCCTGAAACATCCATTGAGTTGCAAGTATGATGGGTTTGCCCCTGTGGATGGCTTGAAAGTGCCAGATACTAAAAATACGTCTGTGGATGAGAGTATTGATCTAGAGAAGTGCAGAACCAAGTGCTTGAATGATTGTTCCTGCATGGCATATACCAATTCAAATATAAGTGGAGCAGGCAGTGGCTGTGTCATGTGGTTTGGGGATTTAATTGACATCAAACTGTATCCAGATCCAGGAAGCGGGCAGCGTCTATATGTAAAGTTGCCTGCTTCAGAATTagATTCTCTCAGGCACAAGAagtctaaaataatatatgtaaccgCCGCTGCTGCAACTATAGGAGTTATACTTGCTATTTATTTTGTCTACAGAAGGACCATTGCCGAGAAGTCAAAGGCAGAAAATAACTATGAAAGTTATGTGGATGATCTGGATCTCCCATTGCTTGATTTGTCAATAATCATTGCGGCCACTAATAACTTCTCAGAGGGGAACAAAATTGGAGAAGGTGGCTTTGGATCTGTATATTGGGTAATTCCATATTTGGTTTCTAATAATAATACCCAAGTTCAAACAACGAGAAAAGTGTTAATATTACATAGAGCATTTACTGATATGAATGTGATTATGCAGGGAAAATTAGCCAGTGGGCTAGAAATTGCTGTGAAGAGACTTTCAAGGAACTCGGATCAAGGAATGAGCGAGTTTGTAAATGAAGTAAAACTGATTGCGAAAGTTCAACACCGAAATCTTGTAAAGCTTCTTGGCTGTTGCattcaaaaacaagaaaaaatgctAGTTTATGAATACATGGTTAACGGCAGCCTTGACTACTTCATTTTTGATCGAATCAAAGGGAAATTGCTAGATTGGCCAAAGCGTTTCCACATAATTTGTGGAATTGCACGGGGACTTATGTACCTTCATCAAGATTCTCGATTGAGGATTATCCATAGAGATCTCAAAGCAAGTAATGTTTTACTAGACAATACTTTGAATCCAAAAATATCAGATTTTGGAATGGCTAGAACTTTTGGAGGAGAGGATATTGAAGGAAACACAAATAGAATTGTTGGAACATATGGGTACATGGCACCAGAATATGCCATTGATGGgcaattttctataaaatcagACGTCTTCAGCTTTGGTGTTTTGCTGTTGGAGATTATATGCGGGAAGAAAAGTAGATCTTATCGCGGAAAGCAAATCCTTAACCTTGTTGATCATGTGTGGACACTCTGGAAAAAGGGTATGACATTACAGATAGTAGATTCAAATATGGAGGATTCGTGTATTGCGGCTGAAGTGTTGCGTTGCATCCATGTTGGGCTGTTGTGCGTGCAACAATACGCAGAGGACAGGCCCACCATGACCTCAGTGGTTCTAATGTTGGGGAGTGAGATGGAATTGGATGAGCCTAAAAGGCCGGGATTTTTAACGAAGAAGAAATCTATTGAAGCAAATTCAAGCTCATGTAGTTCAACCAACGCAATGTCCGTAACCTTATTAACTGCTCGGTGA 2058 0.3994 MLAGMKIGWDFKRKLNRSLIAWKSGDDPTPGDLSWGIVLHPYPEIYMMKGTNKYHRLGPWNGLRFSGMAEMRPNPVFNYKFVSNKDEVSYMWTLQTSLITKVVLNQTTEDRPRYVWSDADKTWNFYSTMPIEYCDHYGFCGANSFCSTTASPMCECLKGFKPKSPEKWNSMVWTQGCVLKHPLSCKYDGFAPVDGLKVPDTKNTSVDESIDLEKCRTKCLNDCSCMAYTNSNISGAGSGCVMWFGDLIDIKLYPDPGSGQRLYVKLPASELDSLRHKKSKIIYVTAAAATIGVILAIYFVYRRTIAEKSKAENNYESYVDDLDLPLLDLSIIIAATNNFSEGNKIGEGGFGSVYWVIPYLVSNNNTQVQTTRKVLILHRAFTDMNVIMQGKLASGLEIAVKRLSRNSDQGMSEFVNEVKLIAKVQHRNLVKLLGCCIQKQEKMLVYEYMVNGSLDYFIFDRIKGKLLDWPKRFHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDNTLNPKISDFGMARTFGGEDIEGNTNRIVGTYGYMAPEYAIDGQFSIKSDVFSFGVLLLEIICGKKSRSYRGKQILNLVDHVWTLWKKGMTLQIVDSNMEDSCIAAEVLRCIHVGLLCVQQYAEDRPTMTSVVLMLGSEMELDEPKRPGFLTKKKSIEANSSSCSSTNAMSVTLLTAR 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1935 685 Pfam S-locus glycoprotein domain 56 164 IPR000858 GO:0048544
Ssu3g1935 685 SMART ntp_6 185 266 IPR003609 -
Ssu3g1935 685 ProSiteProfiles Protein kinase domain profile. 339 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1935 685 SUPERFAMILY Protein kinase-like (PK-like) 327 653 IPR011009 -
Ssu3g1935 685 ProSiteProfiles PAN/Apple domain profile. 185 267 IPR003609 -
Ssu3g1935 685 Gene3D Transferase(Phosphotransferase) domain 1 449 657 - -
Ssu3g1935 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Ssu3g1935 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 355 - -
Ssu3g1935 685 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 387 684 - -
Ssu3g1935 685 Pfam Protein tyrosine and serine/threonine kinase 393 640 IPR001245 GO:0004672|GO:0006468
Ssu3g1935 685 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 355 - -
Ssu3g1935 685 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 387 684 - -
Ssu3g1935 685 CDD PAN_AP_plant 181 267 - -
Ssu3g1935 685 Gene3D Phosphorylase Kinase; domain 1 300 448 - -
Ssu3g1935 685 SMART serkin_6 339 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1935 685 Pfam PAN-like domain 185 250 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1935 Ssu-Chr3 61670190 61672776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1935 327 681 Receptor kinase-like Gene Family AT4G23150 50.420 1.19e-114 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1935 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1935 - - gmx:100810407 1131.32