Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1934 ATGTTGACACTAAACCGTTCTGGCGGTTTGGTCCTTACACACAATAACAAGGATGTTTGGTCCACAAGTTCTCTAAGAGTGGCACAGAATCCAGTGGCAGAGCTATTAGACTCTGGCAACCTTGTGATAAGAGAGAAGAACGAAGCAAAGCCAGAAGAGGAAAATTATTTGTGGCAAAGTTTTGACTACCCTTCTAATACAATGTTGGCTGGGATGAAGATTGGATGGGACTTTAAAAGGAGACTAAATAGAAGTCTCATAGCTTGGAAGAGCGGTGATGATCCAACCCCAGGAGACTTATCATGGGTTATTGTGCTGCATCCCTATCCTGAGATCTATATGATGAAGGGAACAAACAAGTACCACAGACTTGGACCATGGAATGGGTTGCGTTTCAGTGGCATGCCAGAAATGAAGCCTAATCCAGTTTTCAGTTACAAGTTTGTCTCCAACAAGGATGAGGTTTCTTACATGTGGACCTTGCAGACTAGCTTAATAACAAAAGTGGTGCTTAACCAAACCACGCAAGATCGTCCTCGCTATGTGTGGTCCGACGCCGATAAAACATGGAACTTTTATTCAACCATGCCAGGAGAGTACTGTGACCATTATGGCGTTTGTGGGGCCAATTCATTTTGCAGCAGTACTGCATCACCAATGTGTGAGTGTTTGAAAGGGTTCAAGCCTAAGTCTCCTGAGAAATGGAACTCAATAGACTGGACCCAAGGATGCGTCCTGAAACATCAATTGAGTTGCAAGAGTGATGGGTTTGCCCCTGTGGATGGCTTGAAAGTGCCAGATACTAAAAATACGTCTGTGGATGAGAGTATTGATCTAGAGCAGTGCAGAACCAAGTGCTTGAATGATTGTTCCTGCATGGCATATACCAATTCAAATATAAGTGGAGCAGGCAGTGGCTGTGTCATGTGGTTTGGGGATTTAATTGACATCAAACAGTATCCAGTCCCAGAAAGTGGGCAGCGTCTATATGTAAGGTTGCATCCTTCAGAATTAGATTCTCTCAAGCACAAGaagtctaaaataatatttgtaaccGCCGCCGCTGTAACTATAGGAGTTATACTTGCTGTTTATTTTGTCTACAGAAGGAATGTTGCCGAGAAGTCAAAGGcagaaaataattatgaaagttATGTGGATGATCTGGATCTCCCATTGCTTGATTTGTCAATAATCATTGAAGCCACTAATAACTTCTCAGACGGGAACAAGATTGGAGAAGGTGGCTTTGGATCCGTATATTCGGGAAAACTAACCAGTGGGCTCGAAGTTGCTGTGAAGAGACTTTCAAAGAACTCAGATCAAGGAATGAGTGAGTTCGTAAATGAAGTAAAAGTGATTGCAAAACTTCAACACCGAAATCTTGTTAAGCTTTTCGGTTGTTGCATtcataaacaagaaaaaatgctAGTTTATGAATACATGGTTAACGGCAGCCTTGACTACTTCATTTTTGATCGTACCAAAGGGAAATTGTTAGATTGGCCAAAGCGTTTCCACATAATTTGTGGAATTGCTCGGGGACTTATGTACCTTCATCAAGATTCTCGATTGAGGATTGTCCATAGAGATCTCAAAGCAAGTAATGTTTTACTAGACGACACTTTGAATCCAAAAATATCAGATTTCGGAGTGGCTAGAGCTTTTGGAGGAGAGGATATTGAAGGAAACACAAATAGAGTTGTTGGAACATTTGGGTACATGGCACCAGAATATGCTATTGATGGGCAATTTTCTGTAAAATCCGACGTCTTCAGCTTTGGTGTTTTACTGTTGGAGATTATATGTGGGAAGAAAAGTAGATCTCATAGTGGAAAGCAAATCCTTGTCCTTGTTGATCATGTGTGGGCACTTTGGAAAAAGGGTACGGCTTTACAAATAGTTGACCCAAACATGGAGGATTCATGCATTGAATCTGAAGTGTTACGTTGCATCCATATTGGGCTGTTGTGCGTGCAACAATACCCAGAGGATAGGCCTACCATGACCTCAGTGGTTCTAATGCTGGGGAGTGACATGGAATTGAATGAGCCTAAAGAGCCGAGGCTTTTTACGAAGAAGGAATCTATTGAAGCAAATTCAAGCTCATCTAGTTCAATCAACGCAATGTCCATAACCTTATTAACTGCTCGGTGA 2157 0.4103 MLTLNRSGGLVLTHNNKDVWSTSSLRVAQNPVAELLDSGNLVIREKNEAKPEEENYLWQSFDYPSNTMLAGMKIGWDFKRRLNRSLIAWKSGDDPTPGDLSWVIVLHPYPEIYMMKGTNKYHRLGPWNGLRFSGMPEMKPNPVFSYKFVSNKDEVSYMWTLQTSLITKVVLNQTTQDRPRYVWSDADKTWNFYSTMPGEYCDHYGVCGANSFCSSTASPMCECLKGFKPKSPEKWNSIDWTQGCVLKHQLSCKSDGFAPVDGLKVPDTKNTSVDESIDLEQCRTKCLNDCSCMAYTNSNISGAGSGCVMWFGDLIDIKQYPVPESGQRLYVRLHPSELDSLKHKKSKIIFVTAAAVTIGVILAVYFVYRRNVAEKSKAENNYESYVDDLDLPLLDLSIIIEATNNFSDGNKIGEGGFGSVYSGKLTSGLEVAVKRLSKNSDQGMSEFVNEVKVIAKLQHRNLVKLFGCCIHKQEKMLVYEYMVNGSLDYFIFDRTKGKLLDWPKRFHIICGIARGLMYLHQDSRLRIVHRDLKASNVLLDDTLNPKISDFGVARAFGGEDIEGNTNRVVGTFGYMAPEYAIDGQFSVKSDVFSFGVLLLEIICGKKSRSHSGKQILVLVDHVWALWKKGTALQIVDPNMEDSCIESEVLRCIHIGLLCVQQYPEDRPTMTSVVLMLGSDMELNEPKEPRLFTKKESIEANSSSSSSINAMSITLLTAR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1934 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Ssu3g1934 718 CDD STKc_IRAK 412 676 - -
Ssu3g1934 718 Gene3D - 1 92 IPR036426 -
Ssu3g1934 718 ProSiteProfiles Protein kinase domain profile. 406 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1934 718 SMART serkin_6 406 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1934 718 Gene3D Phosphorylase Kinase; domain 1 367 481 - -
Ssu3g1934 718 Pfam D-mannose binding lectin 2 90 IPR001480 -
Ssu3g1934 718 CDD PAN_AP_plant 248 333 - -
Ssu3g1934 718 PIRSF SRK 1 718 IPR024171 GO:0004674
Ssu3g1934 718 SMART ntp_6 252 333 IPR003609 -
Ssu3g1934 718 ProSiteProfiles Bulb-type lectin domain profile. 1 56 IPR001480 -
Ssu3g1934 718 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672|GO:0006468
Ssu3g1934 718 SUPERFAMILY Protein kinase-like (PK-like) 394 702 IPR011009 -
Ssu3g1934 718 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 3 717 - -
Ssu3g1934 718 Pfam PAN-like domain 252 317 IPR003609 -
Ssu3g1934 718 ProSiteProfiles PAN/Apple domain profile. 252 334 IPR003609 -
Ssu3g1934 718 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 95 IPR036426 -
Ssu3g1934 718 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524
Ssu3g1934 718 Gene3D Transferase(Phosphotransferase) domain 1 482 698 - -
Ssu3g1934 718 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 717 - -
Ssu3g1934 718 Pfam S-locus glycoprotein domain 123 231 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1934 Ssu-Chr3 61609878 61612877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1934 349 688 Receptor kinase-like Gene Family AT4G23230 54.913 7.03e-121 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1934 PK_Tyr_Ser-Thr 5.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1934 - - gmx:100810407 1238.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1934 3 61609878 61612877 Ssu8g1064 8 18490593 18497692 PCT