Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1932 ATGTCTCAAGAGGAGTCAAAGGCAGAAAATAACTCTGATAGATATGGGGATGATATGGATCTCCCCTTGATTGATTTGTCAACAATTATAGCTGCCACTGATAATTTCTCAGAAGAGAATAAGATTGGAGAAGGTGGTTTCGGACCTGTATATTGGGGAAAATTAGCCAGTGGGCTAGAAATTGCTGTAAAGAGACTTTCACTGAGCTCGGGACAAGGAATAACAGAGTTTGTAAATGAAGTAAAACTGATTGCAAAACTTCAGCACCGAAATCTTGTAAAGCTTCTAGGTTGTTGCATtcagaaacaagaaaaaatattagtttatgaatACATGGCTAACGGCAGCCTAGATTACTTCATTTTTGATCATAGCAAAGGTAAATCACTTGACTGGCCAAAGCGTTTCCGCATAATCTGTGGAATAGCTCGAGGGCTTATGTATCTTCATCAAGATTCTCGACTAAGGATTGTCCATAGAGATCTCAAAGTAAGTAATGTTTTACTAGATGATGATTTCAATCCAAAAATATCAGATTTTGGAATGGCCAGAACTGTTGGAGCAGATGAGACTGAAagaaacacaaagaaaatagtTGGGACATTTGGGTACATGGCACCAGAGTATGTTGTTGGTGGGCACTTTTCTGTAAAATCTGATGTCTTCAGCTTTGGTATTATACTCCTGGAGATAATATGCgggaagaaaaatagaggacAAATTCGTGGAAAGCAATCCCATAATCTTGCATGGACACACTGGAAATCGGGCAGGACTTCTCAAGTAATTGACCCAAACATTGAGGATTCATTCATTGCATCTGAAATCATACGTTGCATCCATGTTGGGCTCTTGTGTGTACAACAATACCCAGAAGATAGACCTACCATGACCTCAGTGGTTCTAATGTTGGAGAGTGAGATGGAATTGGAAGAGCCTAAAAAGCCGGATTTTTTCAGAAAGAAGGAATCTGTTGAAGCAAATACAGGCTCAAGTGGTGTAACCAATGCAATAACCATTTCCTTAAGTGCTCGGTGA 1038 0.3748 MSQEESKAENNSDRYGDDMDLPLIDLSTIIAATDNFSEENKIGEGGFGPVYWGKLASGLEIAVKRLSLSSGQGITEFVNEVKLIAKLQHRNLVKLLGCCIQKQEKILVYEYMANGSLDYFIFDHSKGKSLDWPKRFRIICGIARGLMYLHQDSRLRIVHRDLKVSNVLLDDDFNPKISDFGMARTVGADETERNTKKIVGTFGYMAPEYVVGGHFSVKSDVFSFGIILLEIICGKKNRGQIRGKQSHNLAWTHWKSGRTSQVIDPNIEDSFIASEIIRCIHVGLLCVQQYPEDRPTMTSVVLMLESEMELEEPKKPDFFRKKESVEANTGSSGVTNAITISLSAR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1932 345 Pfam Protein tyrosine and serine/threonine kinase 39 302 IPR001245 GO:0004672|GO:0006468
Ssu3g1932 345 CDD STKc_IRAK 42 301 - -
Ssu3g1932 345 SUPERFAMILY Protein kinase-like (PK-like) 19 305 IPR011009 -
Ssu3g1932 345 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 334 - -
Ssu3g1932 345 Gene3D Phosphorylase Kinase; domain 1 2 111 - -
Ssu3g1932 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Ssu3g1932 345 ProSiteProfiles Protein kinase domain profile. 36 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1932 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 334 - -
Ssu3g1932 345 SMART serkin_6 36 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1932 345 Gene3D Transferase(Phosphotransferase) domain 1 112 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1932 Ssu-Chr3 61496629 61500449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1932 7 318 Receptor kinase-like Gene Family AT4G23230 55.590 6.35e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1932 PK_Tyr_Ser-Thr 9.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1932 - - gmx:100808807 541.191