Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1930 ATGTGGTTTGAACATCTCATTGACATGAAACAGTTTGAAACTGGCGGGCACGATCTATATATCCGCATGGAGCAACATGGACAGGTGACGATAATAATTGCAACCACAATTGCTGCTGCAATTAGTGGGATACtcttattttgcatttttgtcaTATACAGAGTCCGGAGGAACATTGCTGATAAgtcaaagataaaagagaacATCGAAAGGCAGCTAGAAGATTTGGAAGTGCCATTGTTTGATCTGCTAACAATCACTACTGCCACTAACAATTTCTCATTGAGTAATAAGATTGGACAAGGTGGTTTTGGACCTGTATACAAGGGAAAATTAGTAGATGGGCGAGAAATTGCTGTCAAGAGACTTTCAAGCAGCTCTGGACAAGGAATGACCGAGTTTATGACAGAAATAAAACTGATTGCAAAGCTTCAACACCGAAATGTTGTAAAGCTCCTTGGCTGTTGCTTTCGAGGACAAGAAAAACTAATAGTATATGAGTACATGGTTAATGGCAGCTTAGACTCCTTCATTTTTGatcaaatgaAATGTAGATTACTGGATTGGCCCCAACGCTTCCACATAATATTTGGAATGGCTAGGGGACTATTGTATCTTCATCAGGATTCCCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGAAAAGTTATATCCAAAAATATCAGATTTTGGAATGGCTAAAGCTTTCGGAGGAGACCAAACTGAAGGAAACACAAACAGAGTAGTTGGGACTTACGGATACATGGCCCCAGAGTATGCTGTTGATGGACTATATTCGATCAAATCTGACGTTTTCAGCTTTGGTATTTTACTGTTGGAGATTGTAAGTGGGAACAGAAATAGAGCTCTTTCTCATGGAAACCGGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGATAGAGCATAATGCTTTACAGTTGATTGACTCAAGCATAAAGGACTCATGTGTTATCCCAGAAGTAATGCGATGCATCCATGTTAGTCTCTTGTGCGTGCAACAATACCCGGAGGATAGGCCAACCATGACCTCGGTAATTCAAATGTTAGGGAGTGAGATGGAACTGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGATTTCAGTTGAAGGAAATTTAAGCACCAATCTGAACCAAATGACTTCAAATGATGAATTAACCATTACCTCATTAAGTGGCCGtgTACAGAATGTTAATGACATCTTGTTCAACAATAGAGTTCGAAAAAGATACATGTCTTAG 1290 0.3837 MWFEHLIDMKQFETGGHDLYIRMEQHGQVTIIIATTIAAAISGILLFCIFVIYRVRRNIADKSKIKENIERQLEDLEVPLFDLLTITTATNNFSLSNKIGQGGFGPVYKGKLVDGREIAVKRLSSSSGQGMTEFMTEIKLIAKLQHRNVVKLLGCCFRGQEKLIVYEYMVNGSLDSFIFDQMKCRLLDWPQRFHIIFGMARGLLYLHQDSRLRIIHRDLKASNVLLDEKLYPKISDFGMAKAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLYSIKSDVFSFGILLLEIVSGNRNRALSHGNRTLNLVGYAWTLWIEHNALQLIDSSIKDSCVIPEVMRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPRRISVEGNLSTNLNQMTSNDELTITSLSGRVQNVNDILFNNRVRKRYMS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1930 429 ProSiteProfiles Protein kinase domain profile. 93 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1930 429 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 409 - -
Ssu3g1930 429 SMART serkin_6 93 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1930 429 Gene3D Transferase(Phosphotransferase) domain 1 169 374 - -
Ssu3g1930 429 Gene3D Phosphorylase Kinase; domain 1 53 168 - -
Ssu3g1930 429 SUPERFAMILY Protein kinase-like (PK-like) 73 364 IPR011009 -
Ssu3g1930 429 CDD STKc_IRAK 99 364 - -
Ssu3g1930 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Ssu3g1930 429 Pfam Protein tyrosine and serine/threonine kinase 94 364 IPR001245 GO:0004672|GO:0006468
Ssu3g1930 429 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1930 Ssu-Chr3 61449064 61451287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1930 31 381 Receptor kinase-like Gene Family AT4G23190 50.843 1.59e-124 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1930 PK_Tyr_Ser-Thr 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1930 - - gmx:100807748 681.404