Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1929 ATGAGAAGTTGCTGTCAAGAGACTTTCAAGCAGTTCTGGACAAGGAATAACCGAGTTCATAACAGAAGTAAAACTGATTGCAAAGCTTCAACACCGAAATCTTGTAAAGCTTCTTGGTTGTTGCATCAAGGACAAGAACAATTACTAGTATATGAATACATGGTTAATGGCAGCCTAGATTCCTTCATTTTTGATCAAATAAAAGGTAAATTACTGGATTGGCCACAACGCTTGCACATAATATTTGGAATTGCTAGGGGGCTTTTATATCTTCATCAAGATTCCCGATTAAGGATAATCCATAGAGATCTCAAAGCAAGTAATGTTTTAGTCGATGAGAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAATTGAAGGAAACACAAAGAGAGTAGTAGGGACTTATGGATACATGGCCCCAGAATATGCTTTTGATGGGCTATTTTCAATCAAATCGGATGTTTTCAGCTTTGGTATTTTATTGTTAGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATGGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCAAAATGCTTTACAGTTTATTGACTCAAGCATAAAGGACTCATATGTTATCTCAGAAGTACTGCGATGCATCCATGTTAGTCTCTTGTGCGTGCAACAATATCCGGAGGATAGGCCAACCATGACCTcagtaattcaaatgttaggCAGTGAGATGGAACTGGTTGAGCCAAAAGAGCCTGGCTTCTTCCCAAGGAGGATTtcaaatgaaggaaatttaagCTCAAATCAAAACCAAATGACATCAAAGGATGAATTTACCATTACCACATTAACTGGCCGCTGA 888 0.3671 MRSCCQETFKQFWTRNNRVHNRSKTDCKASTPKSCKASWLLHQGQEQLLVYEYMVNGSLDSFIFDQIKGKLLDWPQRLHIIFGIARGLLYLHQDSRLRIIHRDLKASNVLVDEKLNPKISDFGMARAFGGDQIEGNTKRVVGTYGYMAPEYAFDGLFSIKSDVFSFGILLLEIICGNKNRALCHGNQTLNLVGYAWTLWKEQNALQFIDSSIKDSYVISEVLRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPRRISNEGNLSSNQNQMTSKDEFTITTLTGR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1929 295 SMART serkin_6 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1929 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Ssu3g1929 295 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1929 295 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 43 294 - -
Ssu3g1929 295 Pfam Protein tyrosine and serine/threonine kinase 42 249 IPR001245 GO:0004672|GO:0006468
Ssu3g1929 295 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 43 294 - -
Ssu3g1929 295 Gene3D Transferase(Phosphotransferase) domain 1 54 259 - -
Ssu3g1929 295 SUPERFAMILY Protein kinase-like (PK-like) 45 271 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1929 Ssu-Chr3 61268305 61269488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1929 46 295 Receptor kinase-like Gene Family AT3G45860 55.039 1.41e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1929 PK_Tyr_Ser-Thr 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1929 - - gmx:100807748 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1929 3 61268305 61269488 Ssu3g1929 3 61268305 61269488 ECH