Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1928 ATGAGTGTGAAAATGCAGGGAGTATTGGTGGATGGGTATGAAATTGCTCCAAAGAAACTATCTAGTAGCTCAAGACAAGGATTTACAGAGTTcttaaatgatgtaaaattgaTTGTGAAACTTCAGCATCGAAATCTTGTAAAACTTCTTGGATGGTGCATTCAGGGACAAGAAAAAATGGTAGTATGTGAATACATTCCAAACAGCAGATTAAACTCCTTCATTTTTGAGTATGCTGCTGATGGGCTATTTTCAGAGAAATCTGATGTCTTTAGCTTTGGTATTTTAGTGTTGGAGGTTATATGTGGAAGGAGAAACAGAGGACTTTATCAAGCAGATTACAGTCTTAACCTCATTGGTTATGCGTGGACAATATGGAAAGAGGGCAAGGCATTAGAGTTTGACTCAAAGATGAAAGAGTCATGCACTGAATCAGAAGTATTGCGTTGCCTCCATATTAGTCTTTTGTGTATGCAGCAATACCCAGAAGACAGGCCTGCAATGGCTTCTGTGATTTTAATATTGGGGAGTGAAATGGAATTGGTTGAGCCTAAAGAACCTGGTTTTGTTTACAGGAATGTTTCAGTTGATGCAGATTCATGCTCAAATCTGACGGATGCAAGTTTAGCTAACGATGTGACAATTTCCTTCTTAGAACCTCGATGA 666 0.3784 MSVKMQGVLVDGYEIAPKKLSSSSRQGFTEFLNDVKLIVKLQHRNLVKLLGWCIQGQEKMVVCEYIPNSRLNSFIFEYAADGLFSEKSDVFSFGILVLEVICGRRNRGLYQADYSLNLIGYAWTIWKEGKALEFDSKMKESCTESEVLRCLHISLLCMQQYPEDRPAMASVILILGSEMELVEPKEPGFVYRNVSVDADSCSNLTDASLANDVTISFLEPR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1928 221 SUPERFAMILY Protein kinase-like (PK-like) 8 180 IPR011009 -
Ssu3g1928 221 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 77 218 - -
Ssu3g1928 221 Pfam Protein tyrosine and serine/threonine kinase 77 172 IPR001245 GO:0004672|GO:0006468
Ssu3g1928 221 Pfam Protein tyrosine and serine/threonine kinase 13 75 IPR001245 GO:0004672|GO:0006468
Ssu3g1928 221 Gene3D Transferase(Phosphotransferase) domain 1 61 183 - -
Ssu3g1928 221 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 77 218 - -
Ssu3g1928 221 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 76 - -
Ssu3g1928 221 SMART tyrkin_6 5 175 IPR020635 GO:0004713|GO:0006468
Ssu3g1928 221 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 6 76 - -
Ssu3g1928 221 Gene3D Phosphorylase Kinase; domain 1 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1928 Ssu-Chr3 61253857 61255279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1928 7 82 Receptor kinase-like Gene Family AT4G23220 52.632 7.49e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1928 PK_Tyr_Ser-Thr 7.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1928 - - qlo:115977476 245.743