Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1926 ATGGCACCGGAGTATGCTGTTGATGGGTTATTTTCCGTGAAATCTGATGTCTTTAGCTTTGGCATTTTAGTGTTGGAGATTGTATGTGGCAAGAGAAACAGAGGACGTTATCATACAGATGAGAGTCTTAACCTCGTTGGTCATGCATGGACATTAGGGAAAGCGGGCAGGGCATTAGAATTGATTGACTTAAACATGGAGGAGTCGTGCGTTATATCAGAAGGACTACGCTGCATCCATGTTAGTCTTTTGTGTGTGCAGAAGTACCCAGAAGATAGGCCTACAATGACGACCGTGATTCTAATGTTGGAGAGTCACATGGAATTGGTTGAGCCTAAAGAACATGGTTTCATTTCGAGAAATGTTGTAAGTGAAGTAGATTTACCTTCAAATTGGAAAGACACGAGTTCTAGCAACTATGTGACAATTACCTTGTTAGAAGCACGGTGA 450 0.42 MAPEYAVDGLFSVKSDVFSFGILVLEIVCGKRNRGRYHTDESLNLVGHAWTLGKAGRALELIDLNMEESCVISEGLRCIHVSLLCVQKYPEDRPTMTTVILMLESHMELVEPKEHGFISRNVVSEVDLPSNWKDTSSSNYVTITLLEAR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1926 149 Pfam Protein tyrosine and serine/threonine kinase 1 100 IPR001245 GO:0004672|GO:0006468
Ssu3g1926 149 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 148 - -
Ssu3g1926 149 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 148 - -
Ssu3g1926 149 SUPERFAMILY Protein kinase-like (PK-like) 1 137 IPR011009 -
Ssu3g1926 149 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Ssu3g1926 149 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1926 Ssu-Chr3 60767917 60768460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1926 1 143 Receptor kinase-like Gene Family AT4G23150 46.528 3.01e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1926 PK_Tyr_Ser-Thr 1.1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1926 - - gmx:100802962 246.128