Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1920 ATGTCAGATGATCAATTTCAAGCGAGTGGAAACTGGTGGGAATCAGCGAGAAACGTGAGGTTTGAGAGTGGGGAGTCACAGTCTTCTTCTTCTGGCCTCACCAACATGGGAAACTACGCTTGGCAACATGACATGGCAAGGTCTTCTTCCATGGATAACTCCGCCTCAGGTGGTTCCTCTGTGGTTTTCCATGACCAGAAGCAGCTTCAAGTTCAACCACACCATGACTCAGCCACCTCCACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTTTCATCCCAGGCCATGGACTGGAATCAAGCATCTTTGCAGCTGCGAGGTGAGAAGGGTTCCGAGAGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCACCAGACACCAATTTTCAGCAAGAAAGCGGGAATAACAATATTGGGTTGTCTCAacaccatcatcaccaccaacAAGTTCATTGGAGGCCAGAAAAGTTGTTCACTGCTGAGTCATCAAGCAATGAATTCAAGAGGGGTTTCTCCTTGGATCAAACACAGTTTAGTCCTCAATATAGTTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTTCTTTTCAGATGGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTTTTGGGGCCTGAGAGCAATAACCAACAACCCCACCAGGGTGGTGGTTCATTTGAGAATCGCCCCATGAATTTTCCTTACTCAGCAGCAAGCTATGGATTAAGCTCCAATATTGAGTTGGTGCCTTCTTGGTCTAAAGTCCCTCAGTTTCTGAGAGCTTCACCGCCGAAACAACCACCACCCAATAACCAGTTGCATTTCACCAACAACGCACCCTTTTGGAACGCTAATTCTGAGCCCGCTATTAAGGATGCCTCGTCCCAGCTTCATCCCCTCGTTGCAACCCCCCTTCTCCCCATCAAATTTCGATGTACAACCAAAGtctttacacttaataacaataatAATATATCTGAAGTTAGGGACTCGGGTGGTGTGGTGAAGAAAAGTGGGAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGgtgagaaaagagaagatggGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAGCAAGTCACCGTTTTAAGCACCCCATATATGAAAAGTGGTGCTCCCATTCAGCATCAGCAGAGTTCTGGTAAATCCAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTTTGCTTGGTGCCAGTTTCTAGTACATTTCCAATGACTCACGAACCCACAGTTGAATATTGGACACCAACATTTGGGGGAACTTACAGatag 1431 0.4549 MSDDQFQASGNWWESARNVRFESGESQSSSSGLTNMGNYAWQHDMARSSSMDNSASGGSSVVFHDQKQLQVQPHHDSATSTNDPNLHMMGLGLSSQAMDWNQASLQLRGEKGSESSFRSMLQENLSSPDTNFQQESGNNNIGLSQHHHHHQQVHWRPEKLFTAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCSFQMDYVGNPSSILQGLLGPESNNQQPHQGGGSFENRPMNFPYSAASYGLSSNIELVPSWSKVPQFLRASPPKQPPPNNQLHFTNNAPFWNANSEPAIKDASSQLHPLVATPLLPIKFRCTTKVFTLNNNNNISEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPMTHEPTVEYWTPTFGGTYR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1920 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 423 IPR036638 GO:0046983
Ssu3g1920 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 405 IPR011598 GO:0046983
Ssu3g1920 476 CDD bHLH_AtbHLH_like 362 413 IPR045239 -
Ssu3g1920 476 SMART finulus 367 411 IPR011598 GO:0046983
Ssu3g1920 476 MobiDBLite consensus disorder prediction 218 232 - -
Ssu3g1920 476 MobiDBLite consensus disorder prediction 334 363 - -
Ssu3g1920 476 MobiDBLite consensus disorder prediction 218 237 - -
Ssu3g1920 476 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 464 - -
Ssu3g1920 476 MobiDBLite consensus disorder prediction 420 444 - -
Ssu3g1920 476 Gene3D - 366 428 IPR036638 GO:0046983
Ssu3g1920 476 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1920 Ssu-Chr3 60335539 60339164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1920 108 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.784 5.32e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1920 - - gmx:100818424 747.273