Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1913 ATGATTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAAGATTAGCATGTGGACAAGAGATTGCTGTTAAGAGGCTTTCAAGAACCTCTGGACAAGGAATAAAAGAGTTCAAGAATGAAGTAAAACTGATAGCGAAACTTCAGCACCGAAATCTTGTTAAGCTTCTTGGTTGTTGCGTTCAAGAACAAGACAGAATGCTGGTTTATGAATACATGACTAACTGTAGCTTGGATCGGTTAATTTTTGATGATTCTAAAAGCAAAATGCTAGATTGGCCTAACCGCTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGGTTGAGGATAATTCATAGAGACCTCAAAGCAAGCAATGTTTTGCTTGATGACCAGCTGAACCCGAAAATATCAGATTTTGGCATTGCTAGAATTTTTGGAGGAGATCAGACAGAAGGAAATACAAAGCAAGTAGCTGGAACATATGGCTACATGGCACCAGAATATGCAGCTGATGGTCTTTTTTCTGTGAAATCTGACGTTTTCAGTTTTGGTATTTTATTGCTGGAGATTATAAGTGGAAAGAGAAGTAGaggtttttatattgaaaaccACTCTCCTAACCTTGTCACTTATGCATGGAGTCTGTGGAAAGAGGGCAGGGCTTTAGAACTGGTTGACTCAAACGTAAAGGACTCTTGTGTTCTATCAGAGGTATTGCGATGCATCCATGTCAGTCTCTTGTGTGTTCAGCAACACGCAGAGGATAGGCCTGCCATGCCTTCTGTGGTTCTAATGCTGGGGAGTGAGAGTGAATTGGCTCAGCCAAAAGAACCTGGTTTCTATGTAAAGAATGATCAAGGGGCAACAGGTTCCATCTCAGGTCACAGTGATATAATGTCGAACAATGAAATAACTATCACCTTATTAGAAGCTAGatga 942 0.397 MIGEGGFGPVYKGRLACGQEIAVKRLSRTSGQGIKEFKNEVKLIAKLQHRNLVKLLGCCVQEQDRMLVYEYMTNCSLDRLIFDDSKSKMLDWPNRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDDQLNPKISDFGIARIFGGDQTEGNTKQVAGTYGYMAPEYAADGLFSVKSDVFSFGILLLEIISGKRSRGFYIENHSPNLVTYAWSLWKEGRALELVDSNVKDSCVLSEVLRCIHVSLLCVQQHAEDRPAMPSVVLMLGSESELAQPKEPGFYVKNDQGATGSISGHSDIMSNNEITITLLEAR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1913 313 SUPERFAMILY Protein kinase-like (PK-like) 1 267 IPR011009 -
Ssu3g1913 313 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Ssu3g1913 313 CDD STKc_IRAK 2 267 - -
Ssu3g1913 313 Pfam Domain of unknown function (DUF3403) 270 313 IPR021820 GO:0004674
Ssu3g1913 313 SMART serkin_6 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1913 313 Pfam Protein tyrosine and serine/threonine kinase 2 264 IPR001245 GO:0004672|GO:0006468
Ssu3g1913 313 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 312 - -
Ssu3g1913 313 ProSiteProfiles Protein kinase domain profile. 1 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1913 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Ssu3g1913 313 Gene3D Transferase(Phosphotransferase) domain 1 73 283 - -
Ssu3g1913 313 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 2 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1913 Ssu-Chr3 60243573 60245148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1913 1 281 Receptor kinase-like Gene Family AT4G11530 60.424 3.17e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1913 PK_Tyr_Ser-Thr 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1913 - - gmx:100775648 550.436