Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1912 ATGGCCACTTTcacttttctgtttctttctgCCAAACTACTCATATTGTTCCCTTCAATTTTGTCTGCAACTGATACCATTAACGGGTCGCAGTCCCTTCCTGATGGCACTACCTTGGTGTCTAAAGATGGAACTTTCGAAGTGGGTTTCTTCAGTCCAAGCAATAGTAACACCACCACAAACCGCTACCTTGGAATATGGTACAAAAGTATCCCAGTTAGAACCGTTGTTTGGGTTGCCAACCGTAAAAACCCAGTTAAGGACAACTCCAGCAAGTTGAGCATGAGCACACAAGGAAAACTTGTGATCCTCAGCAAGGACAACACACTTGTTTGGTCGGCAAACTCAACTGAAGAAACAAAAGCACAGAGTCCAATTATTCAGCTTTTAGACTCGGGGAACTTGGTAGTAAGAGATGAGAAAGATTCAAATCCAGAAAACTACTTGTGGCAGAGCTTTGACTACCCTTGTGATACATTTCTGCCAGGAATGAAGATTGGATGGAACCTCAAGAAGGGTCTTAACCGGCGTTTAACGGCGTGGAAGAACTGGGATGATCCTTCTCCCGGGGACTTCATTTGGGGTATGGTGCCTGGTAACCCTCTTGAATTGGTTATGTGGAAaggttctagtgagtattataGGAGTGGCCCTTGGAATGGTGTTAGATTCAGTGGCAAAACCACTCCTCTTTTTAACTTAGAATTTGTATCCACTCATGATGAAGTGTATTACACGTACAACCCCAAGAATAAGTCATTGATTACAAGAGTTGTTTTGAACCAATCTGGTTATTCACGCCACCGCTATAATTGGATTGAAGAGAACCAAACTTGGAGCCTTTATTCGTGGGTGCCTAGTGACATTTGTGACGACTACAACCATTGTGGTCCCTATGGGAATTGTGTAGTGAGTGAGTCACCACCCTGCCAGTGTTTAATGGGGTTCAAGCCAAAATCAGTTCAAAATTATGAGGCATTGGATTGGAGCCAAGGATGTGTGCTTAGTGAACCGTCGAGCTGCGGGGTCAAAAACAAAGATGGTTTTAAGAAATTTAGTGGGTTAAAATTGCCTGACACTACAAGGTCTTGGGTTGATGGAAATTTGACACTTGAGGATTGCGAGGCTAAATGCTTGGAAAATTGTTCTTGCACTGCATATGCATACTTAGATATCAGGGATGGTAATGGTTGCATCAATTGGTTTGGAGCTTTGCTTGATCTAAGGGTGGCTTCACTTCCCGGGCAAGATCTATATATTCGAATGGTTGCTTCAGAAACTGAAGGAAAGGCAGGGCATAATAAAATTGTAGCAGTGGTGATTCCAATTATTCTCCTGGCTTTTGTGATTCTTTTcatttacacatatatttactggCGGAAAAGAAAGCTTAGAGAAAGCACctcagaagagaagaaagatgaAGACTGTGAAGAAGACTTAGAGCTGCCTTTCTTTGACTTTGCGACAATAGTTCGTGCCACTAATGACTTCTCAAGTGACAAGAGGCTTGGCCAAGGTGGTTTCGGGCCTGTGTATAGGggTACACTAGCAGATGGACAAGAGATTGCAGCCAAGAGGCTTTCAAATATTACCGGACAAGGaataaaagaattcaagaaTGAAGTTATATTGTGTGCCAAACTTCAGCATCGAAATCTTGTTAAGGTTCTCGGTTGTTCCATCCAAGGAGAGGAAAAAGTGCTCATCTATGAATATATGCCTAATAAAAGCCTAGATTCGTTTCTCTTTGATTCTTTTAAAAGTGGACTCCTGGACTGGTCTAAGcgctttaacattatttttggaattgCTCGGGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATTCATAGAGACATGAAAGCAAGTAATATTCTACTAGATAGTGAATTGAATccaaaaatttcagattttggtGTGGCACGAATGTTTAGCGGAAATCAAACAGAAGGGAATACAAAAATAGTGGTTGGAACATATGGCTACATGGCACCAGAATATGCAATTGATGGGCTATTCTCGGTCAAATCTGATGTATATAGCTTTGGTATACTATTGCTGGAAATAGTAAGTGGGAAGAAAAACAGAGGAATTTTCTTTCCAGAACATGGATTCAATCTATTAGGACATGTAAGAGAAAGAGcataa 2160 0.3884 MATFTFLFLSAKLLILFPSILSATDTINGSQSLPDGTTLVSKDGTFEVGFFSPSNSNTTTNRYLGIWYKSIPVRTVVWVANRKNPVKDNSSKLSMSTQGKLVILSKDNTLVWSANSTEETKAQSPIIQLLDSGNLVVRDEKDSNPENYLWQSFDYPCDTFLPGMKIGWNLKKGLNRRLTAWKNWDDPSPGDFIWGMVPGNPLELVMWKGSSEYYRSGPWNGVRFSGKTTPLFNLEFVSTHDEVYYTYNPKNKSLITRVVLNQSGYSRHRYNWIEENQTWSLYSWVPSDICDDYNHCGPYGNCVVSESPPCQCLMGFKPKSVQNYEALDWSQGCVLSEPSSCGVKNKDGFKKFSGLKLPDTTRSWVDGNLTLEDCEAKCLENCSCTAYAYLDIRDGNGCINWFGALLDLRVASLPGQDLYIRMVASETEGKAGHNKIVAVVIPIILLAFVILFIYTYIYWRKRKLRESTSEEKKDEDCEEDLELPFFDFATIVRATNDFSSDKRLGQGGFGPVYRGTLADGQEIAAKRLSNITGQGIKEFKNEVILCAKLQHRNLVKVLGCSIQGEEKVLIYEYMPNKSLDSFLFDSFKSGLLDWSKRFNIIFGIARGLLYLHQDSRLRIIHRDMKASNILLDSELNPKISDFGVARMFSGNQTEGNTKIVVGTYGYMAPEYAIDGLFSVKSDVYSFGILLLEIVSGKKNRGIFFPEHGFNLLGHVRERA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1912 719 Pfam PAN-like domain 341 408 IPR003609 -
Ssu3g1912 719 CDD PAN_AP_plant 338 421 - -
Ssu3g1912 719 SUPERFAMILY Protein kinase-like (PK-like) 482 699 IPR011009 -
Ssu3g1912 719 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 187 IPR036426 -
Ssu3g1912 719 Pfam Protein tyrosine and serine/threonine kinase 501 697 IPR001245 GO:0004672|GO:0006468
Ssu3g1912 719 PANTHER - 23 715 - -
Ssu3g1912 719 Pfam S-locus glycoprotein domain 214 320 IPR000858 GO:0048544
Ssu3g1912 719 Pfam D-mannose binding lectin 75 182 IPR001480 -
Ssu3g1912 719 ProSiteProfiles Protein kinase domain profile. 498 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1912 719 Gene3D Transferase(Phosphotransferase) domain 1 574 717 - -
Ssu3g1912 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Ssu3g1912 719 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Ssu3g1912 719 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 715 - -
Ssu3g1912 719 CDD B_lectin 30 156 IPR001480 -
Ssu3g1912 719 Gene3D Hepatocyte Growth Factor 340 409 - -
Ssu3g1912 719 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Ssu3g1912 719 SMART ntp_6 344 422 IPR003609 -
Ssu3g1912 719 Gene3D - 19 153 IPR036426 -
Ssu3g1912 719 SMART blect_4 30 156 IPR001480 -
Ssu3g1912 719 PIRSF SRK 1 719 IPR024171 GO:0004674
Ssu3g1912 719 SMART serkin_6 498 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1912 719 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1912 Ssu-Chr3 60224043 60233385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1912 429 715 Receptor kinase-like Gene Family AT4G23230 54.514 1.25e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1912 PK_Tyr_Ser-Thr 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1912 - - gmx:100790436 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1912 3 60224043 60233385 Ssu3g1912 3 60224043 60233385 ECH