Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1910 ATGCATCCTGTCAAATACGGCACCCCTAGTGGGACCAAGGGAGCCGATGCTAAACATAAGCATCCGAAAAAGGTAGTCTTGGCGGTCGCAATCATAGTTACAGTAGTCTTTCTGATGCTATTGGCATTCTCCTACATTTACATGACCAGAACAAAGAATGAAGAGGAGAAAGATGAAGGTAGGCAAGAAAATTTGGAGCTTCCTTTCTTTGATCTTGCTACAATAATTAATGCCACTAATAACTTCTCAATTAACAAGAAGCTCGGTGAAGGTGGTTTTGGGCCGGTATATAAGGGTACATTGCTAGACGGGCAAGAGATTGCAGTCAAAAGACTTTCAAGGAGCTCTGGACAAGGATTGACAGAATTTAAGAATGAGGTTATATTGTGTGCCAAACTTCAACATCGAAATCTTGTTAAAGTACTTGGTTGTTGCATTGAAGGGGAGGAGAAAATGTTACTCTATGAATACATGCCAAACAAAAGTCTCGACACATTTCTTTTTGatTCGGTTCAAAGCAAACTTTTAGATTGGCCTATGCGCTTTAACATCTTGTGTGCAATTGCTCGAGGGCTTCAATATCTTCATCAAGATTCTAGATTAAGGATCATACACAGAGATCTAAAAgcaagtaatattttattagacaataATATGAATgcaaaaatttcagattttggcTTGGCTAAAATGTGTGGAGCTGATCAAGTTGAAGGGAATACAAATAGAATAGTTGGAACATACGGTTACATGGCTCCCGAATATGCTATTGATGGATTATTCTCTATAAAATCGGATGTATTTAGCTTTGGAGTATTGTTGTTAGAAGTGGTCAGTGGAAAGAAAAACAGAACAGTTACATATGAAGACCACAGTTATAATCTTATTGGACAGGCATGGAGATTGTGGAAAGATGGCATTCCAGAGCAATTGATTGATGCTTGTTTGGTGGATTCATGTAATATATCAGAAGTTGTACGATGCATTCAAGTTGGTCTTTTATGTGTGCAACTTCATCCTGATGATAGGCCAAACATGATATCTGTGATTGTAATGTTGAGCGGCAAAAATGTTTTATCTCAACCTCAGGTACCtagtttcttaattaaaaatatttcaatcattGAAGGTGAGAAATCAAGTGGCAGACAAGAGTCTTCTTCAATCAATGGACTAACTATCTCACAGATAAATGCTAGAtag 1203 0.3599 MHPVKYGTPSGTKGADAKHKHPKKVVLAVAIIVTVVFLMLLAFSYIYMTRTKNEEEKDEGRQENLELPFFDLATIINATNNFSINKKLGEGGFGPVYKGTLLDGQEIAVKRLSRSSGQGLTEFKNEVILCAKLQHRNLVKVLGCCIEGEEKMLLYEYMPNKSLDTFLFDSVQSKLLDWPMRFNILCAIARGLQYLHQDSRLRIIHRDLKASNILLDNNMNAKISDFGLAKMCGADQVEGNTNRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEVVSGKKNRTVTYEDHSYNLIGQAWRLWKDGIPEQLIDACLVDSCNISEVVRCIQVGLLCVQLHPDDRPNMISVIVMLSGKNVLSQPQVPSFLIKNISIIEGEKSSGRQESSSINGLTISQINAR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1910 400 CDD STKc_IRAK 88 353 - -
Ssu3g1910 400 SMART serkin_6 82 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1910 400 Gene3D Transferase(Phosphotransferase) domain 1 158 364 - -
Ssu3g1910 400 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 393 - -
Ssu3g1910 400 Gene3D Phosphorylase Kinase; domain 1 43 157 - -
Ssu3g1910 400 Pfam Protein tyrosine and serine/threonine kinase 83 298 IPR001245 GO:0004672|GO:0006468
Ssu3g1910 400 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 393 - -
Ssu3g1910 400 SUPERFAMILY Protein kinase-like (PK-like) 66 365 IPR011009 -
Ssu3g1910 400 Coils Coil 397 400 - -
Ssu3g1910 400 ProSiteProfiles Protein kinase domain profile. 82 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1910 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1910 Ssu-Chr3 60108082 60111769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1910 26 371 Receptor kinase-like Gene Family AT4G23230 55.085 1.11e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1910 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1910 - - gmx:100790436 650.973