Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1906 ATGAAACTGGGGTGGAACCTAAAGACCAACCTTAATAGGCGTCTAACGGCGTGGAAGAACAAAAACGACCCTTCTAGTGGCGACTTCACTTGGGGTTTCGTACGGAGCAACAACCCCGAAATGGTTATGTGGAAGGGCTCAACAGAGTACTACCGAGGTGGGCCCTGGAATGGGATTCAATTCAGCGCTGCACCGTCTCTGAAGTACGACCCAATGTTCGATTTCGAGTTCGTGCATAATAACGATGAGTTGTATTACACGTACAGCCTCAATAACAAGTCCGTGATTTCAATACTTGTCATGAACCAAAGTAGCTATGCACGCGAGCGTTACACGTGGATCGAGGAAGCCCGAAGTTGGAGGATGTATTCGTCCACGCCGAGAGACCTTTGTGACAGCTACAATCTTTGTGGGCCGTTTGGGAATTGTGCTATGGGTCAGTCCCCCGTTTGCCAGTGTTTGAGTGGGTTTTGGCCCAAATCGCAGCAGAGATGGGCCGCGATGGATTGGACCCAAGGGTGCGAGCGCAACGAAAGTTGGAGGTGCAAGGAGAAGAATAGAgatggttttgttaaatttagtaaCATGAAGGTGCCGGACACTAGTGAATCGTGGGTTGATCGAAGTTTGACACTTGAGGAATGCAAAGTCAAATGCTGGGAAAATTGTTCTTGTACGGCTTTTGCAAACACGGATATAAGGGGAGAAGGGAGTGGCTGTGCCATTTGGTTCGGTGATCTGTTGGATTTGAGACGGATTCCTGATGCTGGACAAGATCTTTATGTTAGATTGGCTGCCTCTGAAATggAAAACAAAGATGCAAAAGATGATTCAAAGAAAAAGGTGGTTGTGATCACAACCACAGTTTCGTCTATTATTGTGGTGCTTTTGATATTGATTTTCATTTGTCGGAGGAGAAATACAAGAGgGATCGACCATGTAAAACAAAAGAATCTTGAAAGCAATCAGGATGATTTGAACCTACCTTTGTTCGACCTTGCTTCATTAGCACATGCTACTGATGACTTTTCAAGTGATAGAAAGCTTGGAGAAGGTGGTTTTGGGCCTGTATATAAGGGAACATTACCAGATGGACAGGAGATTGCCGTTAAGAGACTTTCAAGAAGATCCGGACAAggattaaaagaatttaagaatGAGGTTATCTTATGTGCCAAGCTTCAACATCGAAATCTTGTTAAAGTCCTTGGTTGTTGCATTTGGGAAGATGAGAAATTGCTCATATATGAATACATGCCTAACAAAAGTCTAGATTCCTTTATTTTTGATTCTACTCAAAGCAAGCTTTTAGATTGGCCTAAACGTTTCTACATTATAAGTGGAATTGCTCGAGGATTACTTTATCTACATCAAGACTCAAGATTAAGGATCATACATAGAGATCTTAAAGCTagcaatattttattagacaatGAGATGAACCCAAAAATTTCTGATTTTGGCTTAGCTCGAATGTTTGGAGGTGATCAAATTGAAGGAAACACAAGCAAAATAGTTGGTACATATGGTTATATGGCACCTGAATATGCCTTTGATGGGTTATTCTCCATCAAATCAGATGTATTTAGTTTCGGCCTATTATTACTAGAGATAATAAGTGGCAAGAAAAACAAAGGGCTTTCCTATTCAAACGACAATCGCAATCTTATTGGATATgcaTGGAAAATGTGGAAAGAGGACATCCCAATGAAGTTGATGGATGCTTGTTTAGAAGGCGTGTGTAATGAATTAGAAGTCATACGTTGCATTCATATTGGGCTTTTATGTGTACAACATGATTCAGATGATAGACCAAATATGGCAACTATAGTTGTGATGTTGAATAGTGAGAATGCTTTGCCTCAGCCAAAGGAGCCTAATTTCTTAATAGAGAAGGGGTCAACTAAAGGAGAATCATCTTCTGAGAAGCAAATAACTTCTTCAACAAATGAACTAACTGTCTCAGTGTTGGATGCCagatag 1983 0.4014 MKLGWNLKTNLNRRLTAWKNKNDPSSGDFTWGFVRSNNPEMVMWKGSTEYYRGGPWNGIQFSAAPSLKYDPMFDFEFVHNNDELYYTYSLNNKSVISILVMNQSSYARERYTWIEEARSWRMYSSTPRDLCDSYNLCGPFGNCAMGQSPVCQCLSGFWPKSQQRWAAMDWTQGCERNESWRCKEKNRDGFVKFSNMKVPDTSESWVDRSLTLEECKVKCWENCSCTAFANTDIRGEGSGCAIWFGDLLDLRRIPDAGQDLYVRLAASEMENKDAKDDSKKKVVVITTTVSSIIVVLLILIFICRRRNTRGIDHVKQKNLESNQDDLNLPLFDLASLAHATDDFSSDRKLGEGGFGPVYKGTLPDGQEIAVKRLSRRSGQGLKEFKNEVILCAKLQHRNLVKVLGCCIWEDEKLLIYEYMPNKSLDSFIFDSTQSKLLDWPKRFYIISGIARGLLYLHQDSRLRIIHRDLKASNILLDNEMNPKISDFGLARMFGGDQIEGNTSKIVGTYGYMAPEYAFDGLFSIKSDVFSFGLLLLEIISGKKNKGLSYSNDNRNLIGYAWKMWKEDIPMKLMDACLEGVCNELEVIRCIHIGLLCVQHDSDDRPNMATIVVMLNSENALPQPKEPNFLIEKGSTKGESSSEKQITSSTNELTVSVLDAR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1906 660 CDD STKc_IRAK 349 615 - -
Ssu3g1906 660 Pfam Protein tyrosine and serine/threonine kinase 345 613 IPR001245 GO:0004672|GO:0006468
Ssu3g1906 660 SUPERFAMILY Protein kinase-like (PK-like) 327 623 IPR011009 -
Ssu3g1906 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Ssu3g1906 660 MobiDBLite consensus disorder prediction 633 660 - -
Ssu3g1906 660 ProSiteProfiles PAN/Apple domain profile. 182 265 IPR003609 -
Ssu3g1906 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 653 - -
Ssu3g1906 660 MobiDBLite consensus disorder prediction 623 660 - -
Ssu3g1906 660 Pfam Domain of unknown function (DUF3403) 617 660 IPR021820 GO:0004674
Ssu3g1906 660 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1906 660 SMART ntp_6 185 264 IPR003609 -
Ssu3g1906 660 Gene3D Phosphorylase Kinase; domain 1 305 418 - -
Ssu3g1906 660 Pfam S-locus glycoprotein domain 51 161 IPR000858 GO:0048544
Ssu3g1906 660 SMART serkin_6 343 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1906 660 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 653 - -
Ssu3g1906 660 CDD PAN_AP_plant 183 265 - -
Ssu3g1906 660 Pfam PAN-like domain 182 250 IPR003609 -
Ssu3g1906 660 Gene3D Transferase(Phosphotransferase) domain 1 419 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1906 Ssu-Chr3 59903045 59909120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1906 271 629 Receptor kinase-like Gene Family AT4G23190 51.923 1.82e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1906 PK_Tyr_Ser-Thr 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1906 - - gmx:100786696 896.345