Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1902 ATGAAAGAAAACGTACCAAAATCAATGGAAAGCTTTGAAATGCTTGGTCTATGCCTTTTGTTCCTCTCCTTGATAAGCATGTCCTCCACGTTGGACTTGATTACTCCAACTCAACCCATCAGAGATGGTAAGAATGAGAATAGAACTCTGGTTTCAACAAATGGAATCTTTGAAGCAGGATTCTTCAGCCTTGAAAATTCCAATAGCCGTTACCTTGGAATTTGGTACAAAATATTTCCCACAACAGTTGTTTGGGTAGCCAACAAAGAAACACCCCTTAAAGACCACTCTGGTGTCTTAGAAGTAGACAGTGACCAAGGCATTCTTAGTATCAAGGATGGTACAGGAGTCAAAATATGGTCCTCAAATGCATCAAAGACACCATACAAACCAGTTGTGGTGCAGCTGCTGGAATCAGGAAACATGGTTGTGAAAGATGGACATAATAACCTTTTATGGCAAAGCTTTGATTATCCTGATGACACTTTACTTCCAGGAATGAAACTTGGAAGGAACTTAAAAACTGGTCAACATCGAGCTCTAAGATCTTGGAAATCCTTGACGGATCCTACTCCAGGTATATTTTCATTCGGTGTTGATACTCGTGGCCTTCCTCAATTAGTTATTACAAAGGAGGCTAGTCATGACATAGTTTATAGACCAGGGTCATGGAATGGTCTTAGTGTCACAGGACTCCCTGAAGAAATAACGGACCAATTTACTAAATCTCTCTTTGTTATGAATAAAGATGAGGTCTTCTATGAGATTCAACTCTTGAATAGTTCAACTATACTGAGAAGCAGATTGACCCCAGAGGGCTATCAATTACGTTTCATATggtcaaatcaaaataaaaaatgggataTGCAATACCCCAGTTCATTTGACGTGTGTGAAAGATATGCCTTGTGTGGTACAAATACTATTTGCAATGTCAGTGGAACAGCTCAACACTGTGAATGCTTGAGAGGATTCAAAGCCAACTCGACAGATTCAACTTGTGCTCGAACTACCCCTCTAGACTGTAATAAGGGAGACAAATTTGAGAAGAATGAGGGAATGAAATTGCCAGACACATCTTCATCTTGGTATGATAAGACAATTAGTCTTCAGGAATGTGAGAAATTGTGTTTGAGCAACTGCTCTTGTAGTGCATATGCTCAATTGAATATCAGTGGCAAGGGAAGTGGCTGCTTGCATTGGTTTTCTGACATTGTTGACACCAGGACACTCTCCAAAGGTGGACAAGATTTTTATTTACGAATTACAGCTTCAGAGTTACAAGATCACCGCTTCAACAGGAAGAAACTAGCAGGAATTGTGGTTGGTTGTACTACTTTCATCATTGCCATAACAGTATTCGGATTAATATTTTGCATTAGGAGGAAGAAACTCAAGCAGTCAGAAACAAATTATTGGAAGGACAAGAGTAAGAAGGATGATATTGATTTAccaatatttgactttttatcCATCTCCAATGCCACAAATCACTTTTCAGAGAGTAAGAAATTGGGACAAGGTGGTTTTGGACCAGTTTACaagGGAGTATTACCAGATGGGCAAGAAATTGCAGTTAAGAGGCTTTCTAAAACTTCTAGACAAGGTTTGGATGAGTTCAAAAATGAAGTCATGTTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCCATTCGACAAGATGAGAAGTTGTTGATTTATGAATTCATGCCAAATAGAAGCTTGGACTACTTTATTTTTGATTCAACAAGACGCACATTATTAGGTTGGGCTAAGCGATTTGAAATTATTGGTGGAATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGACTAAAGATCATTCATAGGGATCTTAAGACTGGTAATGTTCTTCTTGATAGTAATATGAACCCAAAAATATCAGATTTTGGTATGGCTAGGACATTTGGCCAAGATCAAGATGATGCAAACACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTGTACATGGATCCTTTTCAGTCAAATCTGATGTCTTTAGCTTTGGAGTGATTGTGTTGGAGATAATTAGTGGGAGGAAAAACAGGGGATTTTGTGACCCACACCATCACCTAAATCTTCTTGGACATGCATGGACATTATGGATTGAAAAAAGGTCAATGGAACTTATGGATGACTTAATGGACAATCCAGTCAGTCCATCTGAAATATTAAGATATATTCACATTGGTTTGTTATGTGTACAACAGAGACCAGAGGATAGGCCAAACATGTCTACAGTAGTTTTAATGTTGAATGGTGAAAAGTTATTACCTGAGCCAAGTCAACCTGGGTTTTACACGGGAAGAGATAATTCACCCATGACAGATTCTTCTTCAAGAAATTGTGATGCATATTCCCTCAATGAAATGTCTAACTCATTGTTCGAGgcaagataa 2454 0.3778 MKENVPKSMESFEMLGLCLLFLSLISMSSTLDLITPTQPIRDGKNENRTLVSTNGIFEAGFFSLENSNSRYLGIWYKIFPTTVVWVANKETPLKDHSGVLEVDSDQGILSIKDGTGVKIWSSNASKTPYKPVVVQLLESGNMVVKDGHNNLLWQSFDYPDDTLLPGMKLGRNLKTGQHRALRSWKSLTDPTPGIFSFGVDTRGLPQLVITKEASHDIVYRPGSWNGLSVTGLPEEITDQFTKSLFVMNKDEVFYEIQLLNSSTILRSRLTPEGYQLRFIWSNQNKKWDMQYPSSFDVCERYALCGTNTICNVSGTAQHCECLRGFKANSTDSTCARTTPLDCNKGDKFEKNEGMKLPDTSSSWYDKTISLQECEKLCLSNCSCSAYAQLNISGKGSGCLHWFSDIVDTRTLSKGGQDFYLRITASELQDHRFNRKKLAGIVVGCTTFIIAITVFGLIFCIRRKKLKQSETNYWKDKSKKDDIDLPIFDFLSISNATNHFSESKKLGQGGFGPVYKGVLPDGQEIAVKRLSKTSRQGLDEFKNEVMLIAKLQHRNLVKLLGCSIRQDEKLLIYEFMPNRSLDYFIFDSTRRTLLGWAKRFEIIGGIARGLLYLHQDSRLKIIHRDLKTGNVLLDSNMNPKISDFGMARTFGQDQDDANTNRVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFCDPHHHLNLLGHAWTLWIEKRSMELMDDLMDNPVSPSEILRYIHIGLLCVQQRPEDRPNMSTVVLMLNGEKLLPEPSQPGFYTGRDNSPMTDSSSRNCDAYSLNEMSNSLFEAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1902 817 Gene3D - 27 156 IPR036426 -
Ssu3g1902 817 ProSitePatterns EGF-like domain signature 2. 319 334 IPR000742 -
Ssu3g1902 817 SMART ntp_6 343 422 IPR003609 -
Ssu3g1902 817 PANTHER - 16 816 - -
Ssu3g1902 817 CDD STKc_IRAK 505 772 - -
Ssu3g1902 817 Pfam PAN-like domain 342 408 IPR003609 -
Ssu3g1902 817 MobiDBLite consensus disorder prediction 779 803 - -
Ssu3g1902 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Ssu3g1902 817 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1902 817 Gene3D Transferase(Phosphotransferase) domain 1 575 776 - -
Ssu3g1902 817 SMART blect_4 41 159 IPR001480 -
Ssu3g1902 817 SUPERFAMILY Protein kinase-like (PK-like) 484 770 IPR011009 -
Ssu3g1902 817 MobiDBLite consensus disorder prediction 784 803 - -
Ssu3g1902 817 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Ssu3g1902 817 Pfam S-locus glycoprotein domain 219 328 IPR000858 GO:0048544
Ssu3g1902 817 Gene3D Phosphorylase Kinase; domain 1 459 574 - -
Ssu3g1902 817 ProSiteProfiles Bulb-type lectin domain profile. 35 157 IPR001480 -
Ssu3g1902 817 CDD B_lectin 47 159 IPR001480 -
Ssu3g1902 817 SMART serkin_6 499 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1902 817 Gene3D Hepatocyte Growth Factor 339 421 - -
Ssu3g1902 817 PIRSF SRK 4 817 IPR024171 GO:0004674
Ssu3g1902 817 CDD PAN_AP_plant 338 422 - -
Ssu3g1902 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 190 IPR036426 -
Ssu3g1902 817 Pfam Protein tyrosine and serine/threonine kinase 502 768 IPR001245 GO:0004672|GO:0006468
Ssu3g1902 817 Pfam D-mannose binding lectin 82 185 IPR001480 -
Ssu3g1902 817 PANTHER - 16 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1902 Ssu-Chr3 59783342 59792415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1902 451 785 Receptor kinase-like Gene Family AT4G23140 55.072 4.51e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1902 PK_Tyr_Ser-Thr 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1902 - - gmx:100802416 1397.1