Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1900 ATGAGTATTGTAATGGCAACGCGTAAGGTTTTTGTTCTGTACTCTCTCATATCATCCTTCATTATCATTCCCATGGTCAGTGCCCTGAGAAGCATGACTCCCgaccaatccatccattacaaCGAGACCCTGCTTTCAGTATCTGGAACTTTTGAAGCGGGGTTCTTCAGCTTAGGAAATTCACAGAGccaatatttttgtatatggTACAAGAGTCTAACACCTAGGACAATTGTATGGGTAGCCAACAGAGATAACGCAGTTGGTAACTCCACAGCTATGTTCAAAGTCACTGATTCAGGAAATCCAGTTATAGTGGATGGCTCAGGGACCACAATATGGTCCTCTAATGCATCAACAACCGCACAGAATCCTGTTATGTTGCTCCTAGACACAGGAAACCTTCTTGTAAGAAATGGAGTGAATGGGAGCATTGTGTGGCAAAGCTTTGATTACCCTGGTGACACTTTACTCCCTGGTATGGTACTTCAAAGTAATAGAGTTAGTGGTGAGCATAAGTCTCTGACATCTTGGAGAAACACTGGAGATCCCGGAAGAGGTGAATTTTCATATCATTTAGATGGTCGTGGCTTTCCTCAACTTGTTATCACAAAGGGGTCAACATTAGTATACAGACTAGGCTCATGGAATGGTTTTTTCTTCGATGGGATTCCTTGGGAAACACTCTACAATTACTTTAGTTTCTCCTTTGAGTTAACTGAGCAGGatgttcattttaaatatgaacCCTTGAATGATTCAATTGTTTCAAGATACATGATCACTCCCACAGGTAGTATGCAACGTTTTTTGTGGTCATCTCAGACAGAAACATGGCAACTTTTCCTAGCTGGTCCTGTGGACCAGTGTGATAACTATGCCTTTTGTGGTGCTAATTCTGATTGCAACGTTAATAGCTCTCCAATTTGTGAGTGCCTACCAGGTTTCACACCCAAATCTCCAGAAAAATGGAGTTTGTCAAATTGGACTGATGGGTGTGTTCGGAAGGTGAATTTGGATTGTGATAATAGAGATGGGTTTGTTAAGCTCACGGAAATGAAGAGGCCGGACACGTCTTCTTCGTGGTTTGATAAGAACATGGATCTCCAGGAATGTGAGAATCAGTGCTTGAAAAACTGCAGCTGCATAGCatattcaagtttaaatattagaGATAGTGGAAGTGGTTGCCTGACGTGGTTTAATAACATCATGGACATGAGGAAAGAAAGTTCTATAGGACAAGAGATTCACATAAAAGTGCCGGCTTCTGAATTAGGTCACTCAACAGATAATGCAAACAAGAAAAAGCTAGCAGGGATTCTAGTAGGCATTGGGATACTTGTATTGGGCATCTCAATAGTTGGATATGTCGTCTATCTAAGGAGGAAGAAACTTAGGAAGTCAGgtaaggaaaaaataattaacaaggaggaccatgttgagaaagatGAGACGGAAAGCATTGACCTGCCAACATTTGATTTTTCAACAATAGTTAATGCCACAGATCATTTCTCCCCCAGTAACATATTGGGAGAAGGTGGATATGGCCCAGTTTACAAGGGTGTACTAGGAAATGGGAAAGAAATTGCCATCAAGAGACTTTCTTTGACATCTGGACAAGGACCAGAGGAATTCAAAAATGAAGTTTTGTTAATTGCCGATCTCCAACATCGAAATCTTGTGAAACTTGTCGGTTGTTGCATCGAGAATGATGAAAGAATCCTAATCTATGAATACATGCCTAACAGAAGTTTAGACAactttatttttgATCGAACTAGAAGCAAAGTATTGGATTGGAACAAACGTTTACATATTATAAGTGGGATTGCTCGAGGGCTTGTCTATCTTCATCAAGATTCTAGATTGAGGATCATCCACAGAGATTTAAAAACCAGTAACATTCTTCTTGACAATGATATGAACCCAAAAATATCAGACTTTGGACTGGCCAGGGCTTTTGGTGGTGAACATGCTGTGGCCAATACAATAAGAGTAGTCGGAACTCATGGTTACATGCCCCCTGAGTATGCAGTATATGGGACTTTTTCTGTGAAATCTGATGTCTTCAGTTTTGGTGTTATTATACTAGAGATGGTTTGTGGGAGGAAGAACAGAGAATTTTCTGACCCACAACACAATCTCAACCTTCTTGGACATGCATGGAGACTGTGGAGTGAGGATAGACCATTGGAGTTGATAGATGACTCCCTTAGCGATTCCGTTATTGCAGCTGAGGCACTAAGATGTATTCACATAGGGCTCTTGTGTGTGCAAGAGAGACCATATGATAGGCCAGACATGTCATCTGTTGTTCTAATGTTGAATGGAGAGAGAGCATTGCCTAATCCAAAACAACCCGGGTTTTATCCGCATGAAGTTTCGTCAAGCAAACAAGAACTGTCTTCAACAAATGAACTTTCCTTTTCATTGTTAGAGGCAAGAtag 2454 0.392 MSIVMATRKVFVLYSLISSFIIIPMVSALRSMTPDQSIHYNETLLSVSGTFEAGFFSLGNSQSQYFCIWYKSLTPRTIVWVANRDNAVGNSTAMFKVTDSGNPVIVDGSGTTIWSSNASTTAQNPVMLLLDTGNLLVRNGVNGSIVWQSFDYPGDTLLPGMVLQSNRVSGEHKSLTSWRNTGDPGRGEFSYHLDGRGFPQLVITKGSTLVYRLGSWNGFFFDGIPWETLYNYFSFSFELTEQDVHFKYEPLNDSIVSRYMITPTGSMQRFLWSSQTETWQLFLAGPVDQCDNYAFCGANSDCNVNSSPICECLPGFTPKSPEKWSLSNWTDGCVRKVNLDCDNRDGFVKLTEMKRPDTSSSWFDKNMDLQECENQCLKNCSCIAYSSLNIRDSGSGCLTWFNNIMDMRKESSIGQEIHIKVPASELGHSTDNANKKKLAGILVGIGILVLGISIVGYVVYLRRKKLRKSGKEKIINKEDHVEKDETESIDLPTFDFSTIVNATDHFSPSNILGEGGYGPVYKGVLGNGKEIAIKRLSLTSGQGPEEFKNEVLLIADLQHRNLVKLVGCCIENDERILIYEYMPNRSLDNFIFDRTRSKVLDWNKRLHIISGIARGLVYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARAFGGEHAVANTIRVVGTHGYMPPEYAVYGTFSVKSDVFSFGVIILEMVCGRKNREFSDPQHNLNLLGHAWRLWSEDRPLELIDDSLSDSVIAAEALRCIHIGLLCVQERPYDRPDMSSVVLMLNGERALPNPKQPGFYPHEVSSSKQELSSTNELSFSLLEAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1900 817 Pfam Protein kinase domain 509 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1900 817 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Ssu3g1900 817 Gene3D - 26 150 IPR036426 -
Ssu3g1900 817 Gene3D Transferase(Phosphotransferase) domain 1 582 786 - -
Ssu3g1900 817 Pfam D-mannose binding lectin 77 179 IPR001480 -
Ssu3g1900 817 Gene3D Phosphorylase Kinase; domain 1 462 581 - -
Ssu3g1900 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Ssu3g1900 817 SUPERFAMILY Protein kinase-like (PK-like) 487 777 IPR011009 -
Ssu3g1900 817 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Ssu3g1900 817 ProSiteProfiles Protein kinase domain profile. 506 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1900 817 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 20 817 - -
Ssu3g1900 817 CDD B_lectin 41 153 IPR001480 -
Ssu3g1900 817 CDD PAN_AP_plant 337 422 - -
Ssu3g1900 817 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Ssu3g1900 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 817 - -
Ssu3g1900 817 CDD STKc_IRAK 512 779 - -
Ssu3g1900 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 218 IPR036426 -
Ssu3g1900 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Ssu3g1900 817 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Ssu3g1900 817 SMART serkin_6 506 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1900 817 SMART blect_4 35 153 IPR001480 -
Ssu3g1900 817 Pfam PAN-like domain 341 407 IPR003609 -
Ssu3g1900 817 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1900 Ssu-Chr3 59652186 59655604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1900 430 808 Receptor kinase-like Gene Family AT4G23220 51.407 6.83e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1900 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1900 - - gmx:106794307 1051.58