Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1889 ATGGTTGATAGCATTAGCATCATAGAGTTATTTTGTTTGTTCCTTTTACTCTCCTTCACGAAAACCTGCACTTCACTAGACAGTTTAGCTGTGAGTCAATCTATCCGAGATGGTGAGAGTTTAGTTTCAGCAGATGGAACATTTGAAGTGGGTTTCTTCAGCCCTGGAAATTCAACAGGTCGTTATTTGGGTGTGTGGTACAGGAATCTGTCTCCTTTAACTGTGGTGTGGGTGGCCAACCGAGGAATACCTCTCAAGAAGAATTTGGGGGTCTTAAAACTCAATGAAAAGGGGGTTCTTGTGATTCTCAACGACACAAAAAGCACTGTTTGGTCATCCAACACATCAAACAAAGCAGTGAATGATCCAATTGCGCTGATCTTGGACTCGGGAAATCTTGTGATAAAAAATGGACAGGATGCTAAGGAGGAGAACTTGTTGTGGCAGAGTTTTGATCATCCATGTGATACAATGATGCCAGGAATGAAGCTTGGATGGAACTTGGTCACTGGTCTAGATAGATATTTGTCATCTTGGAAAAGTGAAGATGATCCAGCCAAGGGAGAGTATTCTTTCAAAGTTGATATAAGAGGATATCCACAACTAGTTCTCATGAAGGGTTCTATTAGGAAGTTTAGATTGGGGTCATGGAACGGCCTTGCTTTAACTGGATATCCAACCCAACAGTTGAAGGGAAAACAAGGATACAAATTTGTCATGAATGCAGAAGAAGTGTATCATCAGTATGAGAACCTTGATAGCTTGATTGTCATATATACATTGAACCCTTCAGGGATTTTGCAGGGATTAGCTTGGACAAGCCAAACTAATGGTCGGAAGGTTATTTCAGCTGGAGCAGAAGACAGTTGTGATAATTATGCTTTTTGTGGTGCAAATTCTATGTGCAATATGTATGGTAATGTTCCGAAATGCGAATGCCTGAAAGGATATGTTCCTAAGTTCCCTGAGCAATGGAATATAGCATATTGGTCTGGTGGTTGTGTTCCAATGAAtaaagatatttgtaaaaacaaCACAGATCACTTCCTGAGGTACACAAACATGAAATTGCCAGACACTTCTTTGTCTTGGTTTAGTAAGACCATGAACCTTGAGGAATGTCAGAGGTCGTGTCTGAAAAACTGTTCTTGTTCAGCATATGCAAATTTAGATATCCGTGATGGAGGAAGTGGCTGTCTACTTTGGTTTGAAGATCTGGTTGACATGAGGAGATTCTCTCAATGGGGACAAGACCTTTACATCAGAGTCCCTGCTTCAGAACTAGATACTGGCCAtggaaacaagaagaaaaagatcatAGGAATCACTATTGGTGTAATCATTTTTGCACTTATTGCTTTTGTCTCCAGAATAATTCTCAGAAAGCAAGTGGCGGCAAGAGTTTCTCGTCAGCTCCTCCCATTGCAATGGCGgcaagaatattttagattgAGGAAGGAAGACATGGATCTGCCAACATTTGATTTGCCAACCATTGCTAAAGCTACCGATAATTTTTCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGGCCAGTGTATAAGGGTACATTGGTAGATGGGCTAGAGGTAGCTATAAAACGACACTCGAAGATGTCTAATCAAGGATTGGAGGAGTTTAAAAATGAAGTTCTGTTGATTGCAAAACTTCAGCACCGAAATCTTGTGAAGCTTCTTGGTTGCTGCATTCgaggagaagaaaaaatgttaatcTATGAATACATGCCCAATAGGAGCTTGGACCTCTTCATCTTTGATGAAACTAGAAGCAAGCTCTTGACCTGGCGTCAGCATTTCAACATTATTGATGGCATTGCTCGAGGGCTTCTCTATCTTCACCAAGATTCTAGACTGAGAATTGTTCACAGAGATTTGAAAACTAGCAATATCCTACTTGATGCTCATATGAATCCAAAAATCTCAGACTTTGGCCTGGCTCGGACTTTTGGGGGTGATCAAATtgaagacaaaacaaaaaaagtggtTGGAACATATGGTTACATGCCTCCAGAGTATGTTGTACATGGTCATTACTCTGCAAAATCAGATGTCTTTAGTTTTGGTGTAATCGTACTTGAAATAGTCAGTGGGAAGAAGAATAGGAAATTTTCTGACCCTGAACATTCTCTCAATCTTCTAGGACATGCATGGAGACTCTGGACTGAAGACAGGCCACTGGAACTGATAGGTAAACACTTGCATGAGAGATGCAATTTTTCTGAAGTCTTACGATGCATACATGTGGGTTTGTTATGTGTACAACAAAAACAAGGAGACAGGCCAGACATGTCCTCTGTCATTCTTATGCTGAATGGTGAGAAATTATTGCCTCAGCCAAAGGCTCCAGGATTTTATACTGGAAGCGGTTTACCTGAATCAGTATCTGCATCTAGAATGTGCAATCTTTTATCCACAAATGAGATGTCCCTTACAATTTTTGAGGCAAGGTAG 2472 0.3928 MVDSISIIELFCLFLLLSFTKTCTSLDSLAVSQSIRDGESLVSADGTFEVGFFSPGNSTGRYLGVWYRNLSPLTVVWVANRGIPLKKNLGVLKLNEKGVLVILNDTKSTVWSSNTSNKAVNDPIALILDSGNLVIKNGQDAKEENLLWQSFDHPCDTMMPGMKLGWNLVTGLDRYLSSWKSEDDPAKGEYSFKVDIRGYPQLVLMKGSIRKFRLGSWNGLALTGYPTQQLKGKQGYKFVMNAEEVYHQYENLDSLIVIYTLNPSGILQGLAWTSQTNGRKVISAGAEDSCDNYAFCGANSMCNMYGNVPKCECLKGYVPKFPEQWNIAYWSGGCVPMNKDICKNNTDHFLRYTNMKLPDTSLSWFSKTMNLEECQRSCLKNCSCSAYANLDIRDGGSGCLLWFEDLVDMRRFSQWGQDLYIRVPASELDTGHGNKKKKIIGITIGVIIFALIAFVSRIILRKQVAARVSRQLLPLQWRQEYFRLRKEDMDLPTFDLPTIAKATDNFSSRNKLGEGGFGPVYKGTLVDGLEVAIKRHSKMSNQGLEEFKNEVLLIAKLQHRNLVKLLGCCIRGEEKMLIYEYMPNRSLDLFIFDETRSKLLTWRQHFNIIDGIARGLLYLHQDSRLRIVHRDLKTSNILLDAHMNPKISDFGLARTFGGDQIEDKTKKVVGTYGYMPPEYVVHGHYSAKSDVFSFGVIVLEIVSGKKNRKFSDPEHSLNLLGHAWRLWTEDRPLELIGKHLHERCNFSEVLRCIHVGLLCVQQKQGDRPDMSSVILMLNGEKLLPQPKAPGFYTGSGLPESVSASRMCNLLSTNEMSLTIFEAR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1889 823 Pfam Protein tyrosine and serine/threonine kinase 509 720 IPR001245 GO:0004672|GO:0006468
Ssu3g1889 823 Pfam Domain of unknown function (DUF3403) 783 823 IPR021820 GO:0004674
Ssu3g1889 823 Gene3D Transferase(Phosphotransferase) domain 1 582 783 - -
Ssu3g1889 823 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 821 - -
Ssu3g1889 823 Gene3D - 21 151 IPR036426 -
Ssu3g1889 823 CDD PAN_AP_plant 342 424 - -
Ssu3g1889 823 SUPERFAMILY Protein kinase-like (PK-like) 489 786 IPR011009 -
Ssu3g1889 823 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Ssu3g1889 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Ssu3g1889 823 ProSiteProfiles Protein kinase domain profile. 506 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1889 823 Gene3D Phosphorylase Kinase; domain 1 471 581 - -
Ssu3g1889 823 SMART blect_4 32 154 IPR001480 -
Ssu3g1889 823 SMART ntp_6 344 423 IPR003609 -
Ssu3g1889 823 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 821 - -
Ssu3g1889 823 Pfam PAN-like domain 342 409 IPR003609 -
Ssu3g1889 823 SMART serkin_6 506 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1889 823 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Ssu3g1889 823 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Ssu3g1889 823 CDD STKc_IRAK 512 779 - -
Ssu3g1889 823 CDD B_lectin 32 154 IPR001480 -
Ssu3g1889 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 185 IPR036426 -
Ssu3g1889 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Ssu3g1889 823 Gene3D Hepatocyte Growth Factor 339 420 - -
Ssu3g1889 823 Pfam D-mannose binding lectin 74 180 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1889 Ssu-Chr3 58828172 58831749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1889 478 792 Receptor kinase-like Gene Family AT4G11480 57.585 1.58e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1889 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1889 - - aprc:113865090 1298.88