Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1883 ATGGAGGAGTCGTCGTGCGCGCTGTGCGAGAAGAGGGCGATGATGCTCTGCGACTCGGACCAGGCTAAGCTGTGCTGGGACTGCGACGAGAAAGTCCACAGCGCCAACTTCCTGGTGGCGAAACACTCGCGCGTGCTTCTGTGTCGTTTGTGCCACTCCCCCACCCCGTGGAGGGCCTCGGGCACGAAACTCACGCCCACGGTGTCGTTTTGCCACCGCTGCGTATCGGATCGACACGCGAGGTGCAACCAATTGGCGAGCGATGAGCAACGAAATCGTGAGTGTGTGGAGGATGATGGGGAACGTGGGTCGGGTCGtgtttatgatgatgatgatgatagtgatgatgatgatgatgatgatgatggggatggagaagaagaggaggaggaggaggatgagGAAGGGGAGAATCAAGTGGTTCCAATGTCCTCTGGCTCTGCCACGTCACCTACCAGCGGTGCCGGTTTAGCATTGAAGCGATTAAGAAATAACTCTTTCTCTGTCGATTCTCATGATGAGACAGCGTGTTCTTCGTCTGAGATGTTTAGTGCTACATTGCCCAGTAGTGATGAATCAACCTCTACGAGCGTCTTCGGGGCATTCAAGAAGCACCGAGTTGATCAAGAAAATTATTGA 639 0.4789 MEESSCALCEKRAMMLCDSDQAKLCWDCDEKVHSANFLVAKHSRVLLCRLCHSPTPWRASGTKLTPTVSFCHRCVSDRHARCNQLASDEQRNRECVEDDGERGSGRVYDDDDDSDDDDDDDDGDGEEEEEEEDEEGENQVVPMSSGSATSPTSGAGLALKRLRNNSFSVDSHDETACSSSEMFSATLPSSDESTSTSVFGAFKKHRVDQENY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1883 212 MobiDBLite consensus disorder prediction 110 138 - -
Ssu3g1883 212 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 188 - -
Ssu3g1883 212 MobiDBLite consensus disorder prediction 90 212 - -
Ssu3g1883 212 CDD Bbox1_BBX-like 6 47 - -
Ssu3g1883 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Ssu3g1883 212 MobiDBLite consensus disorder prediction 90 109 - -
Ssu3g1883 212 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 5 188 - -
Ssu3g1883 212 MobiDBLite consensus disorder prediction 140 154 - -
Ssu3g1883 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu3g1883 212 MobiDBLite consensus disorder prediction 169 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1883 Ssu-Chr3 58568503 58569591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1883 1 90 C2C2-CO-like Transcription Factor Family AT5G54470 55.556 7.24e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1883 - - gmx:100818267 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1883 3 58568503 58569591 Ssu3g1883 3 58568503 58569591 ECH