Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1870 ATGGCAGCAACACTAATGGCAGCCACAGCAAGCTCTGGCACTGTCCTTAAACCAACACCTTTCCTTGGCCAAATTAGGGGAACCAATGCCAACCCTCTTAGAGATGTTGTCTCCATGGGAGCTGGGAGATACACCATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTGACTGGAGAATTCCCAGGGGACTATGGATGGGACACTGCTGGGTTGTCTGCTGACCCTGAAGCATTTGCCAGGAACAGGGCTCTTGAGGTGATCCATGGACGTTGGGCTATGCTTGGAGCACTAGGGTGCATCACCCCAGAAGTACTAGAGAAGTGGGTGAGAGTGGACTTCAAGGAGCCAGTTTGGTTCAAAGCAGGAGCTCAGATATTCTCAGAAGGTGGCCTTGACTATTTGGGGAACCCTAACCTTGTGCATGCACAAAGCATCTTGGCAGTGCTAGGCTTCCAAGTTGTTCTGATGGGTCTTGTTGAAGGATACCGCATCAATGGCCTTCCCGGCGTAGGAGAAGGAAACGACCTCTACCCTGGTGGCCAGTACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACCTTTGCTGAGCTCAAGGTTAAGGAGATCAAGAATGGCAGGCTGGCCATGTTCTCCATGTTTGGCTTCTTTGTCCAAGCCATTGTGACTGGGAAAGGACCACTTGAGAACCTTTTGGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGCCTATGCCACCAAGTTTGTGCCTGGCTCTTAA 810 0.5086 MAATLMAATASSGTVLKPTPFLGQIRGTNANPLRDVVSMGAGRYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWAYATKFVPGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1870 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 269 IPR001344 GO:0009765|GO:0016020
Ssu3g1870 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
Ssu3g1870 269 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 7 269 - -
Ssu3g1870 269 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Ssu3g1870 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1870 Ssu-Chr3 58306676 58308435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1870 1 269 Chloroplast and Mitochondria Gene Families AT2G05070 67.266 2.74e-124 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1870 K08914 - qsu:112007400 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1870 3 58306676 58308435 Ssu3g1870 3 58306676 58308435 ECH