Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1867 ATGGTGCTATCGGCTACGCCATGTTCCTTGGCGAGAAGCTCGCTGGAGGAGATGCTGGATTCGCTTCGCCAGAGGGACGAggaggaggagaagaagaaggacTCGCCGCCGGCGTTGCCCGCGAGGCCGGCCTCGCGGGCAAGGCTTCCTCCGGCGCGGCGGTCGCTGCCGAACGACTTTAAGGTCTGCGGCGGCAGCGAGCGCGTCGCGCCGGAGAATGGAGTTGGTGCTAATGTGGAGAGTGAGGTGAAGCAGAGGGATTTGGGGCAGAAGAGGAGAAGGGGTGGTTTTGGGAGCAAGAGGGTGAAGAAGGATGTGGAGTCTCCTTATGTGGCACTTTCTTCCACTGCTTCATCAGGGGTGGTTTGGGAATTGGAGGGTGATGATGATAGCATTTCTTATTTCATCAAAAAGAAACTTCGTGTTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAACGATAGAGTCAACTTCAGGAGAGGAAGCATCTGTTTCACTCTCAAATGGAAATGTTATGAAAGTGGTGAGATCAGAGATCCTACCAGCTAATCCTGATGTTTTGGAGGGTGTGGATGATCTTATCAAACTCGGTTATTTGAATGAGCCGTCGGTTCTTCACAATCTTACGAGTAGATATTCTCAAGGGATGGTTTATAGTAAAGCAGGCCCCATTTTGATTGCACTCAATCCTTTCAAAGATCTTCAGATGTATGGAAATGATTATGTCTCAGCTTACAGGCACAGATTTACTGATAGTCCTCATGTTTATGCTATAGCAGATGCAGCTTACAACAGGATGATAAGAGATGAAGTAAATCAGTCCATCATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAAACAGCTAAAATTGCATTGCAATACTTAGCTGCtcttggtggtggtggcagttgggcaatagaaaatgaaattctTCAGATAAATTGTATACTAGAAGCTTTTGGGAATGCAAAAACATCAAGGAATAACAACTCCAGCAGATTTggaaaattgattgaaattcatttcagcTCTGTGGGTAAAATATGTGGGGCTAAAATTCAAACCTTATTGTTGGAAAAGTCCAGAGTTGTTCAACTGGCCAGTGGTGAGAGATCCTATCACATATTTTATCAACTTTGTGCTGGATCTTCTTCTGGTCTTAAAGACAGACTGAATCTTAGAGCAGTCAGTGAATATAAATATCTAGTTCAGAGTGACTGCATGTCAATTGATGGTGTCGATGATGCTAAAAACTTTCATCAGCTGATGAAAGCGCTGGATACTGTTCAAATTTGTAAAGAGGATCAAGATCTGATATTTAAGATGCTTGCTGCAATACTATGGTTGGGAAATATATCATTCCAAGTAGACAGTGAAAATCACATTGAGGTTGTCAATGATGAAGCTGTAACCAGTGCTGCCCAGCTGATGGGTTGCAGTTCCCGGGAATTAATGACAGCATTATCTACCCATAAAGTCCAATCTGACAATGATACTATTGCCAAAAATTTGACATTGAGGCAGGCAATTGAAAGAAGAGATGCAATTGCGAAATTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAGCAAGTTAACAAGTCACTTGAAGTGGGTAAAAAATGTACTGGGAAATCCATAAGTATCCTTGATATTTATGGGTTTCAGACTTTCCAGAAAAACAGCTTCGaagagttttatataaattatgctAATGAGAGGATTCAACAACACTTTAATCGGCATCTGTTTAAACTTGAGAAGGAGgACTATGAATTGGATGGCATTGATTGGACTAAAGTAGATTTTGAGGACAATCAAGGGTGCTTGGACCTATTTGAGAAGAAATCTCTTGGCCTACTCTCTTTGTTGGATGAGGAGTCAAATTCACCCAAGGCTTCTGATTTAACATTTGCCAACAAACTTAAGCATCACCTGGACACTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTCCGTGTTCGTCACCATGCGGGGGAGGTTTTGTATGATACGAATGACTTTCTAGAAAAGAACAGAGATACGTTGTCTTCTGATTCTATTCAGTTCCTGTCATCATGTAATTGTGAACTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCTCAAAAGCAGAGTGTTGCAACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACCCCTCACTTCATTTGCTGCATAAAGCCAAATGCTAAGCAGCTTCCTGGCATTTATGATGACAGCCTTGTCCTACAACAGCTCAGGTGTTGTGGAGTTCTAGAAGTTGTTAGACTTTCAAGGGCTGGATATCCTACTCGAATGGCTCATCAAGAGTTTTCCAGAAGGTACGGGTTTCTGCTTTCTGAGGCCACTGTATCGCAGGATCCATTGAGCATCTCGGTTGctgttttacaaaaatttaatatcccTTCCGAAATGTACCATGTTGGCTACACCAAATTGTATCTTCGAGCAGGGCAGATTGATGCACTGgagaataagagaaaacaggtttTGCAGGGAATACTTGGGATTCAAAAATGCTTCCGTGGTCATCAAGCTCGTGGTTATTTCTGTGAACTTAAGAATGGAGTGACAACATTACAATCATTTATTCTTGGAGAAAATACAAGAAGGAAATATGGTGTTGTGATGAAGTCTTCAATAACAATTTATTCTAGAAAACTGGAGGAGATCCATGCAATCATACTATTACAATCTGTAATTCGTGGGTGGCTGGTTAGAAGGGATGCTAGTCAAGTAAATAGGTTGAAGAAGTATCCTGAAAATGCTAAACCTAGGCAGAAATCCCATATGAAGATACCAGAAGTAAAGGATTTGTCCAAAGAGCCGGTTCACAAACTGCTTTCAGCTTTAACAGAACTCCAAAGGCAGGTTGACAAGGCAGATGCAATTGTGGAGGAGAAGGAAGAGGAAAATGCTGAATTGAGGGAACAGCTAAAACGATCTGAGAGAAAGAGGATTGAATATGAGACAAAAATGAAATCAATGGAGGAGGCTTGGCAAAAACAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTCCTGAGAATGCTACCGTTCAACCTGTAAGACGCGATTTTGTGTTGCCTCGCGGTTATGATTCTGAAGATGCTACTTCCATGGGATCCCGAACGCCTGGTGGGAGCACACCAATGTTTTCTGGTAGTCTATCTGTCTCTGAAGCAGGGAGACAGGTCAATGGTACTTTGACTACAGTCAGCAATCTGATGAAGGAATTCGAGCAGCAAAGACAGAACTTCGATGATGAAGTAAAAGCTTTGAACGAGGTTAAACCAGGGCAATCTGGGTGCTCAAATTCCGTTGAAGAACTTCAGCAACTTAAACATAGATTTGAGGGATGGAGGAAACAATACAAGGTTAGATTACGTGAGACCAAAGCAAGGCTTCATAAATCAGAAAAAAGTCGGCGAACATGGTGGGGGAAGTTAAGCTCAAGAGCATAA 3534 0.4103 MVLSATPCSLARSSLEEMLDSLRQRDEEEEKKKDSPPALPARPASRARLPPARRSLPNDFKVCGGSERVAPENGVGANVESEVKQRDLGQKRRRGGFGSKRVKKDVESPYVALSSTASSGVVWELEGDDDSISYFIKKKLRVWCRQPRGQWELGTIESTSGEEASVSLSNGNVMKVVRSEILPANPDVLEGVDDLIKLGYLNEPSVLHNLTSRYSQGMVYSKAGPILIALNPFKDLQMYGNDYVSAYRHRFTDSPHVYAIADAAYNRMIRDEVNQSIIISGESGSGKTETAKIALQYLAALGGGGSWAIENEILQINCILEAFGNAKTSRNNNSSRFGKLIEIHFSSVGKICGAKIQTLLLEKSRVVQLASGERSYHIFYQLCAGSSSGLKDRLNLRAVSEYKYLVQSDCMSIDGVDDAKNFHQLMKALDTVQICKEDQDLIFKMLAAILWLGNISFQVDSENHIEVVNDEAVTSAAQLMGCSSRELMTALSTHKVQSDNDTIAKNLTLRQAIERRDAIAKFIYASLFDWLVEQVNKSLEVGKKCTGKSISILDIYGFQTFQKNSFEEFYINYANERIQQHFNRHLFKLEKEDYELDGIDWTKVDFEDNQGCLDLFEKKSLGLLSLLDEESNSPKASDLTFANKLKHHLDTNPCFKGERGRAFRVRHHAGEVLYDTNDFLEKNRDTLSSDSIQFLSSCNCELLQLFSKMFNQSQKQSVATKFKGQLFKLMHQLESTTPHFICCIKPNAKQLPGIYDDSLVLQQLRCCGVLEVVRLSRAGYPTRMAHQEFSRRYGFLLSEATVSQDPLSISVAVLQKFNIPSEMYHVGYTKLYLRAGQIDALENKRKQVLQGILGIQKCFRGHQARGYFCELKNGVTTLQSFILGENTRRKYGVVMKSSITIYSRKLEEIHAIILLQSVIRGWLVRRDASQVNRLKKYPENAKPRQKSHMKIPEVKDLSKEPVHKLLSALTELQRQVDKADAIVEEKEEENAELREQLKRSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLAPENATVQPVRRDFVLPRGYDSEDATSMGSRTPGGSTPMFSGSLSVSEAGRQVNGTLTTVSNLMKEFEQQRQNFDDEVKALNEVKPGQSGCSNSVEELQQLKHRFEGWRKQYKVRLRETKARLHKSEKSRRTWWGKLSSRA 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1867 1177 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 137 186 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 MobiDBLite consensus disorder prediction 19 37 - -
Ssu3g1867 1177 ProSiteProfiles IQ motif profile. 908 936 IPR000048 GO:0005515
Ssu3g1867 1177 Pfam Myosin head (motor domain) 192 834 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 SMART iq_5 907 929 IPR000048 GO:0005515
Ssu3g1867 1177 SMART iq_5 870 892 IPR000048 GO:0005515
Ssu3g1867 1177 SMART iq_5 847 869 IPR000048 GO:0005515
Ssu3g1867 1177 PANTHER MYOSIN-2 ISOFORM X1 121 1176 - -
Ssu3g1867 1177 ProSiteProfiles Myosin motor domain profile. 190 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 Coils Coil 1093 1120 - -
Ssu3g1867 1177 Gene3D Myosin VI head, motor domain, U50 subdomain 431 538 - -
Ssu3g1867 1177 Coils Coil 12 32 - -
Ssu3g1867 1177 PRINTS Myosin heavy chain signature 318 345 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 PRINTS Myosin heavy chain signature 549 577 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 PRINTS Myosin heavy chain signature 220 239 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 PRINTS Myosin heavy chain signature 602 630 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 PRINTS Myosin heavy chain signature 274 299 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 Pfam IQ calmodulin-binding motif 910 926 IPR000048 GO:0005515
Ssu3g1867 1177 SMART MYSc_2a 184 847 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu3g1867 1177 ProSiteProfiles IQ motif profile. 850 877 IPR000048 GO:0005515
Ssu3g1867 1177 PANTHER MYOSIN 121 1176 - -
Ssu3g1867 1177 MobiDBLite consensus disorder prediction 19 58 - -
Ssu3g1867 1177 Gene3D Kinesin motor domain 189 779 IPR036961 -
Ssu3g1867 1177 Coils Coil 1145 1165 - -
Ssu3g1867 1177 Coils Coil 969 1017 - -
Ssu3g1867 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 930 IPR027417 -
Ssu3g1867 1177 Gene3D - 780 891 - -
Ssu3g1867 1177 Gene3D - 374 430 - -
Ssu3g1867 1177 Gene3D - 561 736 - -
Ssu3g1867 1177 CDD MYSc_Myo8 204 834 IPR036022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1867 Ssu-Chr3 58235686 58250541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1867 1 1172 Myosins gene family AT5G54280 59.265 0.0 1424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1867 K10357 - gmx:100802614 1944.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1867 3 58235686 58250541 Ssu3g1867 3 58235686 58250541 ECH