Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1864 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCTAAGCACAGAAAGATACTGGAAGGACTTCTTAAACTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAGGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGCTCAGGAATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTACGAAGAGAAGAGATGGGTTGCAAGGGATGAGAAACCAAAATCACCTTCTAGATTGCGAGAAGAGAAAATTGCTTCACATTTGCAAAGGCCTGTGGAAAGAGGTGGGCATAGTTATGCAGCTGTGTCTGAGAATACTTTtgaggaaaggaagaaaatcCAACCATCGAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGGCCTGAGCTgGTAACTCCTGTGGCAAAACCTCAACATGTTGAGAAAGTGGAACCTGTTGCACCACCACCAAAAGCTGAAACTTCAAAGCAGACTACTGACACAACACAAAATTCCCCTCCAAAAGTTAACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGGTCCAAATGAAAAGAGCTCAGGGGCAGCTGATGCTACTGTTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATTGACAGCCGAGAAGACTGATGCCACAAAAGCAGTTGAGAGTATACCCCAGTCCACTTCTGGAATCGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTCcagaaaaacaacaaaaagatcTAAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATATGGTGTCTCCATTTTCGATGCATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCTGCTGCTAAATCTGCTGGTGGGGAATCCAAGTACCTGGCCAgcttacaacaacaacaacagtctCTTCTAAtggctgctgctgctgctgctaaATCTGCTGGTGGGGATTCCAAGTACCCGGCCAGCATACAAAAACCTGGGTCCAATATTCCTGTCCAAAGTTGGCCAGCTGCTAGCTACCCGATCCCAGGTGCAATGCCCATGGGTGGTCAGGAAGAGTTGCAGAAACTCATGCAGACAATGAACATGACTGCAGCACATTCAGCAGGGAGTTCAGTTCAGTATCCACCATCTAGTTACTATGCCATGGGGCAAGTTGCTCCAGTTAATGGTACGACGACAACGGGAGCGAGCAAACCTCAGTCAGCATCTCCGGTATCATCGACCACTTCAAAAACAGGGAACGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAGCCCTGA 1512 0.4299 MNEKANVSKELNAKHRKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARDEKPKSPSRLREEKIASHLQRPVERGGHSYAAVSENTFEERKKIQPSNAIPATRISVPAPPKGPELVTPVAKPQHVEKVEPVAPPPKAETSKQTTDTTQNSPPKVNYATDLFDMLSMDGPNEKSSGAADATVDDNNWAGFQSAAEALTAEKTDATKAVESIPQSTSGIEDLFKDSPSVTPSLTPEKQQKDLKNDIMSLFEKTNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSAGGESKYLASLQQQQQSLLMAAAAAAKSAGGDSKYPASIQKPGSNIPVQSWPAASYPIPGAMPMGGQEELQKLMQTMNMTAAHSAGSSVQYPPSSYYAMGQVAPVNGTTTTGASKPQSASPVSSTTSKTGNDYDFSSLTQGMFAKP 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1864 503 MobiDBLite consensus disorder prediction 292 312 - -
Ssu3g1864 503 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 370 IPR044520 GO:0005096
Ssu3g1864 503 CDD ArfGap 19 117 - -
Ssu3g1864 503 PANTHER ARF GTPASE ACTIVATOR 371 502 - -
Ssu3g1864 503 MobiDBLite consensus disorder prediction 213 231 - -
Ssu3g1864 503 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Ssu3g1864 503 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Ssu3g1864 503 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Ssu3g1864 503 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Ssu3g1864 503 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Ssu3g1864 503 MobiDBLite consensus disorder prediction 463 495 - -
Ssu3g1864 503 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Ssu3g1864 503 MobiDBLite consensus disorder prediction 163 231 - -
Ssu3g1864 503 MobiDBLite consensus disorder prediction 292 311 - -
Ssu3g1864 503 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Ssu3g1864 503 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 371 502 IPR044520 GO:0005096
Ssu3g1864 503 MobiDBLite consensus disorder prediction 463 503 - -
Ssu3g1864 503 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Ssu3g1864 503 PANTHER ARF GTPASE ACTIVATOR 1 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1864 Ssu-Chr3 58174845 58180904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1864 2 123 C2H2 Transcription Factor Family AT4G05330 46.154 1.41e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1864 K12486 - gmx:100807561 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1864 3 58174845 58180904 Ssu3g1864 3 58174845 58180904 ECH