Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1858 ATGGCGAAATCGAAGTCGAAGTCGAAGGAGATTGAGATGAAAGCTACGAGTAGCACTAGCACTAAACTATCGGCTCGAGACATATACAAACTAGCACCGACACCTGATCAACTGAAAGCGCTGAAGATGTCGTACACGGATTTCCATCCGGTTGGAGCCGGCGAGCACGGCACCGTTTTCAGGTGCAAGCGGCATTCGAATGATAAGGACTTTTTCGCCATCAAAATTATCCCGATTTCGAAACAAGAGCAAGAGAATGGCGTTCCGTACAGGATTATAAGAGAAGTCTCTCTTCTTAAAGAGATGGAGCACGTCAACATTGTGAGGTTGAAGGATGTGATGGCCACTGACGATGACCTGTTTCTTGTTTTCGAGTATCTTGACAATAGTCTCCATGCTTTCTTGAGAAATCCAGTGATGTTTTTGtatccaaaaatgatgagaAATTTTCTTCATCAAATTATTTCTGCAGTAGCATATATCCATTCTTGCAAAATTCTTCACAGAGATTTGAACGCTGAGAATATTCTGCTTCAGTTCAGTACCCGTATTGTGAAGATTGCAGACTTTGGTGCGGCCAGAACATTTGAAGTTCCTCTTGAGTCTTACTCTAAAAATgTGGGTTCTCCTTCTTATAGGGCACCTGAACTCTTGTTTGGCTCCGCCAATTACTCAACTCCAAATGATGTCTGGTCCGTGGGTTGTATATTTGGTGAGATGGTTCTTCGCCGGCCTGTATTCTCTGGCGGAAGTGATTGGGAACTGCTGGATAAGATATTTAcCTTGCTTGGCACCCCAACAGAAGAAACCTGGCCTGGAGTGACTTCTTTATGCGGCTCCATTAGTGCAATGGGCCCTCCAAAACAGCCGAAGGACCTGAGAATTGTGTTTGCTGACCTCGAAGATCCAGCTGGTCATGATCTACTTTCGAAATTGCTTTGCCTGTGTCCAAATTATAGAATTTCAGCTGAAGAGGCTGTTAAGCACCCATATTTCGAAGGAATATGA 1008 0.4335 MAKSKSKSKEIEMKATSSTSTKLSARDIYKLAPTPDQLKALKMSYTDFHPVGAGEHGTVFRCKRHSNDKDFFAIKIIPISKQEQENGVPYRIIREVSLLKEMEHVNIVRLKDVMATDDDLFLVFEYLDNSLHAFLRNPVMFLYPKMMRNFLHQIISAVAYIHSCKILHRDLNAENILLQFSTRIVKIADFGAARTFEVPLESYSKNVGSPSYRAPELLFGSANYSTPNDVWSVGCIFGEMVLRRPVFSGGSDWELLDKIFTLLGTPTEETWPGVTSLCGSISAMGPPKQPKDLRIVFADLEDPAGHDLLSKLLCLCPNYRISAEEAVKHPYFEGI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1858 335 PANTHER CELL DIVISION PROTEIN KINASE 45 332 - -
Ssu3g1858 335 Pfam Protein kinase domain 45 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1858 335 SUPERFAMILY Protein kinase-like (PK-like) 44 334 IPR011009 -
Ssu3g1858 335 ProSiteProfiles Protein kinase domain profile. 45 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1858 335 ProSitePatterns Protein kinases ATP-binding region signature. 51 75 IPR017441 GO:0005524
Ssu3g1858 335 Gene3D Transferase(Phosphotransferase) domain 1 130 335 - -
Ssu3g1858 335 PANTHER CYCLIN-DEPENDENT KINASE A-2 45 332 - -
Ssu3g1858 335 Gene3D Phosphorylase Kinase; domain 1 43 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1858 Ssu-Chr3 58087066 58090833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1858 44 335 Core Cell Cycle Gene Families AT3G48750 43.345 8.92e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu3g1858 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1858 K02206 - gmx:100804719 381.333