Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1849 ATGGTGAAGATGGAACTCATAAAATGGGTTCCCtatgttgtggttgttgtttttcTGGTTTTGGTTAATGGGTCCTTTGCCTTATACACTGCTCCTGATAGTTATCTAATTGCTTGTGGTTCTTCTCAAAACATCACCTTCCAAGGTCGCACTTTTGTTCCTGATTCTCAGCATTCTTCacttgttttgaaaactgtgaaTTCTGTTGTTACTAGTTCCAATTCTAGTGCCCCTTTTCCAATTTACCAATCGGCTCGGGTTTTCACCGAGAAGGGTTCTTATAGGTTTGAGATTCAGCAAGAAGGTAGGCACTGGGTTAGGCTATACTTTTCCCCTATTCCAAACTCTGGCCATAACTTGACTTCAGCTTCTTTAACAGTGGTTACTGATGATTTTGTACTCTTGAGCAATTTCACCTTTAGGAAATACAATGGTTCTTATATGTTCAAGGAGTATGCAATCAATGTTACCTCTGATGCACTGACTGTCACCTTCATTCCTTCGAATGGTTCGGTAGCCTTTGTCAATGCAATTGAAGTTGTGTCAATGCCAAATGAGTTATTTGTTGATCAGGCACGGGCTGTTGACCCGCCAGCACCATTCAGTGGACTTTCTGAGCTTGCCTTCGAAACTGTTTATCGCTTGAACGTGGGGGGTCCTTTGATTACTGCCCAAAATGACACCCTGGGTAGGACTTGGGTGAATGATAGGAAATACCTTCATGTGAACAGCTCTGTCCTTAATGTGTCGGTAGATCCTTCGACCATTAGGTATCCGGTGGCTGTTACACCCGAGACAGCCCCAAATTGGGTCTATGCCACTGCTGACGCAATGGGGGATGCTAATGTAAATGATCCAAATTTCAACATTACCTGGGTCTTCATTGTGGATCCAAATTTCTCCTATTTCATCCGGGCACACTTTTGTGATATTATGAGCGGGTCACTCAACACTTTAGTGTTCAATGTGTTCATAAATTCTGACATAGCTCTTCAAAGCCTTGACCTCTCATCCATAACTAATGACTTGGCTGTGCCTTACTACAAGGACTTCGTTGCCAATGCCTCGGAAGACTCTAGCACTTTGACTGTGAGTGTTGGTCCAGATACTGTGGCAGACTTCCAAAATGCCACTATGAATGGGTTGGAGATAATGAAGATCAGCAATGCTTTAAAGAGCTTGGACGGGCTTTATTCAGTTAACAGTCTTCTTCCAAGTTCACATTCTAAGAAAAGTAGGGTAGGAGTAATGATTGGTTCTGCAGTTGCAGCTCTAGCTGCTGTAACAATGGTTGGTTTGTGTTATTGCTGCTTGGTGAGACGCAAGTCAAAGTCCCCTCAACAGGGCCATTCATGGCTGCCTTTACCCCTATATGGAAACTCTCTTACCATGacaaaaaattcaacaatttcacAGAGGAGTGGAACTGCAAGCTGCATTTCTTTAGCTTCATCAAATCTTGGACGATTCTTCAGTTTCCAAGAAATCCTAGATGCAACCAACAAATTCGATGAGAAGCTACTTCTTGGTGTTGGTGGTTTTGGAAGGGTTTATAAGGGAACACTTGAAGATGGGACCAATGTAGCTGTTAAAAGGGGCAACCCGAGATCTGAGCAAGGCCTTGCTGAATTCCGGACAGAAATTGAAATGTTGTCCAAGCTTCGCCACCGTCATCTTGTGTCCCTCATTGGTTATTGTGATGAGAGGTCTGAAATGATTCTTGTCTATGAATACATGGCTAATGGACCCCTCCGGAGTCATTTGTATGGAACGGACCTGCCACCTCTATCATGGAACCAGCGGCTTGAGATTTGCATTGGAGCAGCAAGAGGCCTTCATTATCTCCACACCGGCGCTGCTCAAAGCATAATTCACCGCGATGTGAAGACAACAAATATCCTCTTAGACGAGAACTTTGTTGCCAAAGTCGCCGATTTTGGCCTCTCCAAGACTGGTCCTGCTCTTGATCAGACCCATGTGAGCACTGCTGTTAAGGGTAGTTTTGGTTATCTTGATCCTGAGTACTTCAGAAGGCAACAGCTTACTGAGAAATCAGATGTGTATTCATTTGGGGTAGTGTTAATGGAAGTGTTATGCACAAGGCCAGCCTTGAACCCTGTCCTTCCCAGGGACCAGGTTAACATAGCTGAGTGGGCAATGAACTGGCAGAAAAAAGGAATGCTTGACCAAATCATGGATCAAAATCTTGTTGGCAAGGTGAATCCTGCTTCCCTTAAGAAGTTTGGGGAGACGGCTGAGAAGTGCTTGGCTGAGCACGGCATGGACCGCCCGTCCATGGGAGATGTTTTGTGGAATCTTGAATATGCACTGCAGCTTCAAGAGACCTCATCAGCCCTCATGGAGCCTGAAGATAACAGCACAAACCACATCACTGGAATTCAGTTGGCACCCCTTGAGCATTTTGACAACAGCGTGAGTATGATCGATGGGGGCCGCTCTTGCACTGATGATGATGCAGAAGATGCTGCCACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGCGGAAGATAA 2535 0.4398 MVKMELIKWVPYVVVVVFLVLVNGSFALYTAPDSYLIACGSSQNITFQGRTFVPDSQHSSLVLKTVNSVVTSSNSSAPFPIYQSARVFTEKGSYRFEIQQEGRHWVRLYFSPIPNSGHNLTSASLTVVTDDFVLLSNFTFRKYNGSYMFKEYAINVTSDALTVTFIPSNGSVAFVNAIEVVSMPNELFVDQARAVDPPAPFSGLSELAFETVYRLNVGGPLITAQNDTLGRTWVNDRKYLHVNSSVLNVSVDPSTIRYPVAVTPETAPNWVYATADAMGDANVNDPNFNITWVFIVDPNFSYFIRAHFCDIMSGSLNTLVFNVFINSDIALQSLDLSSITNDLAVPYYKDFVANASEDSSTLTVSVGPDTVADFQNATMNGLEIMKISNALKSLDGLYSVNSLLPSSHSKKSRVGVMIGSAVAALAAVTMVGLCYCCLVRRKSKSPQQGHSWLPLPLYGNSLTMTKNSTISQRSGTASCISLASSNLGRFFSFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWNQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPRDQVNIAEWAMNWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGMDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLAPLEHFDNSVSMIDGGRSCTDDDAEDAATSAVFSQLVNPRGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1849 844 SMART serkin_6 503 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1849 844 ProSiteProfiles Protein kinase domain profile. 503 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1849 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Ssu3g1849 844 Gene3D - 207 389 - -
Ssu3g1849 844 Gene3D - 34 184 - -
Ssu3g1849 844 Gene3D Transferase(Phosphotransferase) domain 1 579 799 - -
Ssu3g1849 844 Pfam Malectin-like domain 37 387 IPR024788 -
Ssu3g1849 844 Pfam Protein tyrosine and serine/threonine kinase 508 770 IPR001245 GO:0004672|GO:0006468
Ssu3g1849 844 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Ssu3g1849 844 PANTHER OS07G0166700 PROTEIN 21 837 IPR045272 GO:0004714|GO:0006468
Ssu3g1849 844 CDD STKc_IRAK 509 774 - -
Ssu3g1849 844 Gene3D Phosphorylase Kinase; domain 1 463 578 - -
Ssu3g1849 844 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 21 837 - -
Ssu3g1849 844 SUPERFAMILY Protein kinase-like (PK-like) 470 773 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1849 Ssu-Chr3 58015929 58018463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1849 15 844 Receptor kinase-like Gene Family AT3G46290 52.138 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu3g1849 Malectin_like 4.3e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1849 - - gmx:100809700 1523.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1849 3 58015929 58018463 Ssu3g1849 3 58015929 58018463 ECH