Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1837 ATGGAGAGCACCGAAGACTCATCCACGAGTTCACAACAACCGAACCTGCCACCCGGGTTTCGCTTCCACCCCACAGACGAGGAGCTCGTGGTTCATTACCTCAAGAAGAAGGTTGATTCTGCTCCTCTCCCTGTTTCAATCATCGCCGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGGGAGGAAGAGTGGTACTTTTTCAGCCCGAGGGATAGGAAGTACCCGAATGGCGCGAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAGGCCACGGGGACAGATAAGCCTGTGTGTAGTGGAACACAGAAGATTGGGGTGAAGAAATCTTTGGTTTTCTATAGAGGGAAGCCACCAAAAGGGGTCAAGACCGATTGGATCATGCATGAGTACCGTCTTGCTGATAGCAAGCCCAACAATAAGCCTCCTGGATGTGACTTGGGCCACAAGAAAAACTCCCTAAGgCTCGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGCAATTCACAAAGGACACCTATGGACCATGACAAGGATGATTCCATGGATGACATGATTGGAGAAGTACCCCCTTCCATCAACGTGGGCCACATGAATGCGAGATTTCACCTTTCAAGGATGTCCACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGGAACATGTTAGAAAGCGTGGTTATAGGCAATGGTGTGAATGGGATCGGCACTACAAGTGCCATATCACCTCAGTTTGGCACCTCAAACTCCAAGCCAGAGTTTCCTTTTGCACCTTCAGATAACACGTTAGCCTCCAAAAGAACACTCTCATCGCTGTATTGGGATGGCGGTAATGAGGATGTGACTGGCACATCGTGTGGCAAACAGTTCAATTTGGACAGTAATGGGAATGTTGTGAGGACACATGAAGAGAATAATGGCACTGCTGGCTCCTTTGCTACTCTGCTTAACCATCTTCCACAGACACCTTCATTGCCCCAAATAGGTTCTTTAGGAGATGGGTTGCTTCGGACACCGTTTCAAATACAAGACACGAATTGGTATGGTTAA 1077 0.4819 MESTEDSSTSSQQPNLPPGFRFHPTDEELVVHYLKKKVDSAPLPVSIIADVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVCSGTQKIGVKKSLVFYRGKPPKGVKTDWIMHEYRLADSKPNNKPPGCDLGHKKNSLRLDDWVLCRIYKKGNSQRTPMDHDKDDSMDDMIGEVPPSINVGHMNARFHLSRMSTSYSGALLENDRNMLESVVIGNGVNGIGTTSAISPQFGTSNSKPEFPFAPSDNTLASKRTLSSLYWDGGNEDVTGTSCGKQFNLDSNGNVVRTHEENNGTAGSFATLLNHLPQTPSLPQIGSLGDGLLRTPFQIQDTNWYG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1837 358 Gene3D NAC domain 25 180 IPR036093 GO:0003677|GO:0006355
Ssu3g1837 358 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Ssu3g1837 358 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 336 - -
Ssu3g1837 358 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g1837 358 PANTHER NAC TRANSCRIPTION FACTOR 56 1 336 - -
Ssu3g1837 358 SUPERFAMILY NAC domain 8 175 IPR036093 GO:0003677|GO:0006355
Ssu3g1837 358 ProSiteProfiles NAC domain profile. 16 175 IPR003441 GO:0003677|GO:0006355
Ssu3g1837 358 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1837 Ssu-Chr3 57695783 57697645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1837 20 357 NAC Transcription Factor Family AT3G15510 53.203 1.45e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g1837 NAM 1.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1837 - - gmx:100812933 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1837 3 57695783 57697645 Ssu3g1837 3 57695783 57697645 ECH