Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1835 ATGGGAGTTCCAGAGAGAGACCCTCTAGCACAATTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACCGATGAGGAGCTTCTGGTTCAGTACCTTTGCCGCAAGGTTGCTGGGCACCATTTTTCTCTTCCAATCATTGCCGAAGTTGATTTGTACAAGTTTGATCCTTGGGTTCTTCCGGGTAAGGCGGTGTTTGGTGAGAAAGAGTGGTACTTTTTCAGCCCCAGAGACAGGAAGTACCCAAATGGTTCGCGACCGAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACCGGAACCGACAAAGTCATCACCACCGAAGGCAGAAAAGTCGGCATAAAAAAAGCACTTGTTTTCTACGTTGGCAAAGCACCCAAAGGCTCCAAAACCAACTGGATCATGCACGAGTATCGTCTTCTCGACTCTTCGCGCAAAAACAACCTCGGAACCACAAAGCTTGACGACTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCACAAAAGACTGAGGCAAAATTTTGGGCTAAAGAATGCAGCAATGGGTCGTCACCTTCTTCATCGTCCCACGTGGACGACATGCTCGAATTGTTGCCGGAGATCGATGACCGATGCTTCACGTTGCCGCGCGTGAACTCGCTCAGAACGCTGCAACAGCAGGACGAGAAATTCGGGTTTCCAAACATGGGGACCGGAATTTTCCCGGATTGGGGTAACCTGACGGATCTCAATTCAGTTTCTGAATTCGGGTCGGGCTGCCAGACCCATGGGATGatgaattataattgtaatgaCTTATTTGTCCCTTCTGCGCCGCCCTTCGGCCACGTGGACTTCATGGTGGGGGCGCCGACGACGGAGGAGGAGGTTCAGAGCGGTGTGAGGACCCAACAGGGCGAGGGGCCTGGGGGTTTCCAGCAGAATCCGAATGCCCGATTGTTATCGGGCTCCGGCGACTCGTTTGGGTTTGGGTTCATGGGCCAGCAAGTCGGGTTCAGGTTACGGGACTAA 1014 0.5148 MGVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKTEAKFWAKECSNGSSPSSSSHVDDMLELLPEIDDRCFTLPRVNSLRTLQQQDEKFGFPNMGTGIFPDWGNLTDLNSVSEFGSGCQTHGMMNYNCNDLFVPSAPPFGHVDFMVGAPTTEEEVQSGVRTQQGEGPGGFQQNPNARLLSGSGDSFGFGFMGQQVGFRLRD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1835 337 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Ssu3g1835 337 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Ssu3g1835 337 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Ssu3g1835 337 PANTHER NAC TRANSCRIPTION FACTOR 56 1 315 - -
Ssu3g1835 337 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Ssu3g1835 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1835 Ssu-Chr3 57574531 57576371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1835 1 334 NAC Transcription Factor Family AT4G27410 54.875 8.17e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g1835 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1835 - - gmx:100811301 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1835 3 57574531 57576371 Ssu3g1835 3 57574531 57576371 ECH