Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1823 ATGGTGCCTCTTGTGATTTCTTCGAGTTTTCTTTGGTATCTTTGCTTTGTTCTCAGTGCAGTTAGAGTCCACGTCCAAGCCAATAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAATCCCACCAGCCTCGGGGGAGCATGTGGCTATGATGATACCTTTCATGCTGGGTTTGGGGTGAACACTGCGGCGGTGAGCACTATGCTTTTCAGAGACGGTGAGGTTTGTGGTGCTTGCTACCAAGTAATGTGTGACTACAGGGCCGACCCAAAATGGTGCCTTATTAGCCGCAGTGTGACAGTAACCGCCACAAACTTTTGCCCTCCAAACAACCACGGAGGGTGGTGTGACCCCCCTCACCATCACTTCGACATGTCCATGCCTGCTTTCTTTGGCATTGCACGGCAAGGCAATGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGGGGAGTGAGGTTCACATTGAAGGGGCAATCCAGTTTCAACATGGTGATGATATCCAATGTTGGTGGGAGTGGGGATGTGAAGGCTGTGTGGATCAGAGGATCCAGAAGTGGAGCATGGTTGCCAATGCATAGGAATTGGGGGGCCAACTGGCAAAGCAGTGCAGATCTCAGAAACCAGAGACTCTCATTCAAGATGACATTGGTTGATGGGAAGACACTGGTGTTCCTCAATGTGGTGCCTTCCACTTGGAGGTTTGGACAAACATTTTCATCCCGGAGTCAGTTCTTTTAG 768 0.4974 MVPLVISSSFLWYLCFVLSAVRVHVQANNGWLNAHATFYGANQNPTSLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVMCDYRADPKWCLISRSVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFGIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSSFNMVMISNVGGSGDVKAVWIRGSRSGAWLPMHRNWGANWQSSADLRNQRLSFKMTLVDGKTLVFLNVVPSTWRFGQTFSSRSQFF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1823 255 Pfam Lytic transglycolase 66 150 IPR009009 -
Ssu3g1823 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Ssu3g1823 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Ssu3g1823 255 Gene3D - 16 156 IPR036908 -
Ssu3g1823 255 Gene3D - 160 255 IPR036749 -
Ssu3g1823 255 PANTHER EXPANSIN-A12 6 254 - -
Ssu3g1823 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Ssu3g1823 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Ssu3g1823 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Ssu3g1823 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Ssu3g1823 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Ssu3g1823 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Ssu3g1823 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Ssu3g1823 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Ssu3g1823 255 PANTHER EXPANSIN-A15 6 254 IPR002963 GO:0009664
Ssu3g1823 255 SMART dpbb_1 66 150 IPR007112 -
Ssu3g1823 255 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Ssu3g1823 255 SUPERFAMILY Barwin-like endoglucanases 15 178 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1823 Ssu-Chr3 57148143 57151064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1823 6 255 Expansin Gene Family AT3G15370 59.286 1.56e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1823 - - gmx:106795376 523.087