Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1820 ATGGAATCTAAATACTTTGACTCCAATGGGGAAGTCTCACTAAagcaaaaatcaaaatccattTCAACAGAGCCAACAATTTCTACCAGTGAAAATGATTGCTTTGATTGCAATATTTGCCTGGAATCAGCACATGATCCTGTGGTCACTTTCTGTGGTCACCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATGTCCAAAGCTCCTCTGTTGAACCAGACCAGCAGCAAACATGCCCAGTTTGTAAATCTGAGATCTCTCACACTTCATTAGTCCCCCTCTATGGCCGTGGAACATCTAACTCGGAATCTGAAGCCAAGAAACTCCAGATGAGTCTGGGAATACCTCAAAGGCCACCTCCTTACAACTTGAATGCTATGTTAACTTCCGCTCGTGCACGGATTTCACATCCTGGCCAGCAACTGCATCCAAGTTATTTCCAGACACAATCAAGACCATTTCATTACCAGCAGTACTTCCCTCCCCTTTATGGAAGCTATGGCTCCAATGGATTACCTTATCTTGGAGGTGCTGCTATGACTAGTTTCTTTAATCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGGATTTTTGGGGTCTCAGATGCAAATTTGTTTGCTTACCCTCGTAATGGAAGTGGGAGTCCTAGAATGAGAAGGCAGGAAGTGCAGATTGACAAGTCTCTTAACAGACTTTCTATCTTTCTCCTATGTTGTATCATTTTGTGTCTTCTCTTATTTTGA 753 0.4197 MESKYFDSNGEVSLKQKSKSISTEPTISTSENDCFDCNICLESAHDPVVTFCGHLYCWPCIYKWLDVQSSSVEPDQQQTCPVCKSEISHTSLVPLYGRGTSNSESEAKKLQMSLGIPQRPPPYNLNAMLTSARARISHPGQQLHPSYFQTQSRPFHYQQYFPPLYGSYGSNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFAYPRNGSGSPRMRRQEVQIDKSLNRLSIFLLCCIILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1820 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 148 IPR013083 -
Ssu3g1820 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Ssu3g1820 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Ssu3g1820 250 SMART ring_2 37 83 IPR001841 -
Ssu3g1820 250 SUPERFAMILY RING/U-box 33 96 - -
Ssu3g1820 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Ssu3g1820 250 CDD RING-HC_AtRMA_like 35 85 - -
Ssu3g1820 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 250 - -
Ssu3g1820 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1820 Ssu-Chr3 57050912 57051664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1820 2 236 C3H Transcription Factor Family AT4G27470 46.888 9.49e-58 182