Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1786 ATGGAGTTTCAAAGACCCCTATGCCTCTTATTTCTCCTCACCCTTCTCTCAAGCTCCCAAGCCCACAAATTCAACGTTGGTGGAAGCCAAGGGTGGGTTCCAAACCCCTCCGAGAGTTACAACAATTGGGCTGGAAGGAACCGGTTCCAAACCAATGACACAATAgTTTTCAAGTACCAGAAGGGTTCGGACTCAGTGTTGGAAGTGAAGAAGGAAGATTATGACAAGTGCAACAAGACCAACCCAATCAAGAAGTTTGAAAACGGTGACTCGGAGTTCAAGTTTGATCGATCCGGACCATTCTACTTCATTAGTGGAAAAGATGGGAATTGTGAAAAGggtcaaaaattaattgttgtgGTTTTGTCCCCAAGAACACCACCATCACCAAAACCTTCACCTTCACCGTCCCCAAAGCCAAGCCCACCAACCGGGTTGCCGCCGGCGTCACCACCCACCTCAATGTCTCCGACGGTTCAACCTCCGTCTCCATCGCCGTCTCCGGCGACATCTCCGGTGCCCGCCGCCGTACCTCCGGGGACATCTCCGGCGCCGGCAGCCTCATCTCCACGGCCGTCTCCGGCAACTATATCACCTTCTCCGGTGAACTCCCCTCCGGCACCGGCGCCGGGGACGGGAACTCCACCGCCAACGTCGGGTCCTTCTTCTCCGTCGGAGACGGGAACTCCACCGCCATCACCGGGTCCTCCTTCTCCGCCGGCGCCAAATTCATCCCCAGCGCCGGCGTCTAATTCAACGGCACCGTCATCGAAAAATAGTGGATCATCTTTGGCTCCTTCAATTGTTTTGGTGTATTCGGTTACAATTGTCGTTGGTGCTGCGTTGCTGCGTTACTGA 858 0.5326 MEFQRPLCLLFLLTLLSSSQAHKFNVGGSQGWVPNPSESYNNWAGRNRFQTNDTIVFKYQKGSDSVLEVKKEDYDKCNKTNPIKKFENGDSEFKFDRSGPFYFISGKDGNCEKGQKLIVVVLSPRTPPSPKPSPSPSPKPSPPTGLPPASPPTSMSPTVQPPSPSPSPATSPVPAAVPPGTSPAPAASSPRPSPATISPSPVNSPPAPAPGTGTPPPTSGPSSPSETGTPPPSPGPPSPPAPNSSPAPASNSTAPSSKNSGSSLAPSIVLVYSVTIVVGAALLRY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1786 285 MobiDBLite consensus disorder prediction 125 246 - -
Ssu3g1786 285 SUPERFAMILY Cupredoxins 21 122 IPR008972 -
Ssu3g1786 285 Gene3D - 20 125 IPR008972 -
Ssu3g1786 285 PANTHER BLUE COPPER PROTEIN 1 283 IPR039391 GO:0009055
Ssu3g1786 285 PRINTS Proline rich extensin signature 157 178 - -
Ssu3g1786 285 PRINTS Proline rich extensin signature 140 152 - -
Ssu3g1786 285 PRINTS Proline rich extensin signature 120 136 - -
Ssu3g1786 285 PRINTS Proline rich extensin signature 179 195 - -
Ssu3g1786 285 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 1 283 - -
Ssu3g1786 285 CDD OsENODL1_like 22 122 IPR041846 -
Ssu3g1786 285 ProSiteProfiles Phytocyanin domain profile. 22 123 IPR003245 GO:0009055
Ssu3g1786 285 MobiDBLite consensus disorder prediction 123 266 - -
Ssu3g1786 285 Pfam Plastocyanin-like domain 32 115 IPR003245 GO:0009055
Ssu3g1786 285 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1786 Ssu-Chr3 55509499 55510500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1786 3 169 Phytocyanin Superfamily AT5G53870 54.545 1.19e-56 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1786 - - gmx:100795901 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1786 3 55509499 55510500 Ssu3g1786 3 55509499 55510500 ECH