Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1777 ATGATGCTGCAAAGATGTTACCCTATGGCTTTTGTGCAATGGGGTTTCTTGGCtttctttctttgcttttctGTGGGACTTGAAACCCCAGCCAGATCCTGTGCCAAGCATGATCTATTGGCCCTGAAGGAATTTGCAGGCAACCTTACACAAGGGTCTATCATCGCAGAATGGTCAAATAATGATGTCTGCTGCAAATGGGTTGGAGTTATTTGTGATGATGTGGCTGATGGAGCTGCTGCTAGTAGGGTGTCCAAGTTGATTCTACCTGGAAAGGGTCTCAACGGCACGATTTTGAGTTCTTTAGCCTATCTAGATGAGCTAAAGGTGCTCGATCTTTCATTCAATCGTCTCCAAGGTGGATTGCCTTCTGAGTTCTCCAAGTTGAAGCGGTTAGAAGTTCTTGACTTGAGCCATAACATGCTGTCTGGACCAGTTGGTGGGGCACTTTCTGGTTTGCAATCCATTCAGATACTGAATATTTCTAGCAATTTATTTGTTGGAGACCTCTTCCATTTTGGGGGATTACAACATCTCCTTGCTCTCAACATAAGCAACAATTCATTCACTGGCCAGTTCAATTCTCAAATTTGCAGCTCGTCCAAAGGTCTTCATATTCTTGATGTATCCAAAAATCATTTTGCTGGTGGTCTTGAATGGTTGGACAACTGTAGCACATCTCTCCAACAGTTACATTTGGATTCCAATTTATTTTCTGGCCATCTTCCTGATTCCTTGTATTCAATGTCAGCCTTGGAGCAGCTCTCAGTCTCTGTGAACAATTTCTCCGGTCAGTTAAGCAAGGAACTGGGCAACCTCTCAAGCCTAAGATCTCTAATAGTTTCTGGAAATCAGTTTTCAGGGGAACTCCCAAATGTTTTTGGGAATCTTTTGGACCTTGAACAATTAATAGGAAACTCCAATTCATTTTCTGGATCATTGCCTTCCACCTTGGCCTTATGCTCAAAACTTCGAGTGCTTAAtcttagaaataattctttgaCAGGTTCTGTTGGTCTTAATTTCACTGGGTTGTCCAATCTTTTCACATTGGACATTGGTAGCAATCATTTTAATGGTTCCTTTCCAAATTCCTTGTCCTATTGCCATGAATTGACAATGTTAAGCCTTGCTAAAAATGAATTAACTGGCCAAATCCCTGAGAGCTATGCAAACCTCACTTCACTTTTGACTCTGTCTTTGTCCAACAATAGCTTTGAGAACTTACCTGGGGCGCTTTATGTACTGCAGCAGTGCAAAAATATCACCACTCTTATCCTCACAAAGAATTTCCATGGTGaggaaattccagaaaatttaaCAGCAGGCTTCAAGAGCCTTGTGGTTTTAGGACTCGGAAATTGTGGTCTCAAAGGCCGTATTCCTGCTTGGCTATTGAATTGCACAAAATTGGAAGTTCTTGATTTGTCATGGAACCATTTGGAAGGTAGTGTCCCTTCTTGGATTGGTGGGATGGACAATTTGTTCTACTTGGATTTGTCAAATAATTCTCTTACAGGAGAAATACCAAAAGGTTTGACAGAGTTGAAGGGCCTCATATCCCCCACTGATCATATATCAAGTCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGATAATGGGCTGCAATATAACCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACAGATTGAGTGGAGCAATATGGCCTGAAATTGGTCGTCTAAAAGAACTTCATATCTTAGATTTAAGCAGGAACAATATCACTGGCACCATTCCTAGCTCTATTTCAGAGATGAAGAATTTGGAAATATTAGATTTATCTAATAATAGTCTTGTTGGAACTATTCCTCCATCATTTAATGACCTCACATTCTTGTCTAAGTTCAGTGTGGCATATAACCACTTACAGGGACCGATTCCATGTGGGGGACAATTTTCAAGTTTCCCAAATTCAAGTTTTGATGGCAACCTGGGGCTTTGTGGGGAAACATATCATCCTTGTAACAGTGAACAAAATGAGGGTTTGACTGCTACTCATTCTGTGGGAAAATTTGGTAAAAGCAGTGTCCTTGGCATAACAATTGGTTTAGGAGTAGGCCTTGCACTGCTTCTTGCAGTTATTCTGCTAAGAATGTCAAAGAGGGATGAGGATAAGCCAGTTGATAACTTTGATGAGGAGCTTAGCTGGTCAAACAGGATGTCTGAAGCACTTGTTCCTTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGAAGATTTGTTAAAATCCACCAACAATTTTAACCaagaaaatataattggttGTGGCGGGTTTGGTCTTGTCTACAAGGCGAATCTTCCGAATGGCACAAAGGTAGCTATCAAGAAACTTTCAGGGTACTGTGGTCAGGTGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAGCATAATAACCTTGTTTCACTTAAAGGTTATTGTCAGCATGTCAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCGTTGATTATTGGCTGCATGAGAGTGAGGATAGAAATTCAGCTCTAAAATGGGATGTAAGACTCAAGATTGCCCAAGGTGCAGCTCATGGATTAGCTTATTTGCACAAGGAGTGTGAACCGCATATTGTGCATCGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTTATTTGGCAGACTTTGGTCTTTCTAGGCTACTTCAACCCTATGATACCCATGTTTCAACAGATTTAGTAGGAACTTTGGGATATATTCCTCCAGAATATAGTCAGGCACTGAAAGCAACTTTCAAGGGTGATATTTATAGTTTTGGTGTTGTTCTTTTTGAGCTTCTTGCTGGTCGAAGGCCTGTAGAAGTCATTGTCGGGCAACGCAGCAGGAATCTCGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCAGTCATTTGGCACAAGGATAATGAGAAACAGCTCTTAGAGGTACTAGCTATTGCTTGTAAATGTGTAGATCAAGATCCAAGGGAGAGACCCCATATTGAATTAGTTGTTTCTTGGCTTGATAGTGTAGGATTTGATGGCTCTCAACAGTCATCATCTTAA 3162 0.401 MMLQRCYPMAFVQWGFLAFFLCFSVGLETPARSCAKHDLLALKEFAGNLTQGSIIAEWSNNDVCCKWVGVICDDVADGAAASRVSKLILPGKGLNGTILSSLAYLDELKVLDLSFNRLQGGLPSEFSKLKRLEVLDLSHNMLSGPVGGALSGLQSIQILNISSNLFVGDLFHFGGLQHLLALNISNNSFTGQFNSQICSSSKGLHILDVSKNHFAGGLEWLDNCSTSLQQLHLDSNLFSGHLPDSLYSMSALEQLSVSVNNFSGQLSKELGNLSSLRSLIVSGNQFSGELPNVFGNLLDLEQLIGNSNSFSGSLPSTLALCSKLRVLNLRNNSLTGSVGLNFTGLSNLFTLDIGSNHFNGSFPNSLSYCHELTMLSLAKNELTGQIPESYANLTSLLTLSLSNNSFENLPGALYVLQQCKNITTLILTKNFHGEEIPENLTAGFKSLVVLGLGNCGLKGRIPAWLLNCTKLEVLDLSWNHLEGSVPSWIGGMDNLFYLDLSNNSLTGEIPKGLTELKGLISPTDHISSLFASAAIPLYVKRNKSDNGLQYNHASSFPPSIYLSNNRLSGAIWPEIGRLKELHILDLSRNNITGTIPSSISEMKNLEILDLSNNSLVGTIPPSFNDLTFLSKFSVAYNHLQGPIPCGGQFSSFPNSSFDGNLGLCGETYHPCNSEQNEGLTATHSVGKFGKSSVLGITIGLGVGLALLLAVILLRMSKRDEDKPVDNFDEELSWSNRMSEALVPSKLVLFQNSDCKDLTVEDLLKSTNNFNQENIIGCGGFGLVYKANLPNGTKVAIKKLSGYCGQVEREFQAEVEALSRAQHNNLVSLKGYCQHVNDRLLIYSYLENGSVDYWLHESEDRNSALKWDVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLFELLAGRRPVEVIVGQRSRNLVSWVFQMKSENREQEIFDSVIWHKDNEKQLLEVLAIACKCVDQDPRERPHIELVVSWLDSVGFDGSQQSSS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1777 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 164 - -
Ssu3g1777 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 449 517 - -
Ssu3g1777 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 282 439 - -
Ssu3g1777 1053 SMART serkin_6 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1777 1053 Pfam Protein kinase domain 770 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1777 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 616 1044 - -
Ssu3g1777 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 561 617 - -
Ssu3g1777 1053 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Ssu3g1777 1053 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Ssu3g1777 1053 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Ssu3g1777 1053 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Ssu3g1777 1053 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Ssu3g1777 1053 SUPERFAMILY L domain-like 548 667 - -
Ssu3g1777 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 616 1044 - -
Ssu3g1777 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 561 617 - -
Ssu3g1777 1053 Gene3D Phosphorylase Kinase; domain 1 731 844 - -
Ssu3g1777 1053 Gene3D Ribonuclease Inhibitor 301 370 IPR032675 -
Ssu3g1777 1053 ProSiteProfiles Leucine-rich repeat profile. 494 517 IPR001611 GO:0005515
Ssu3g1777 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672|GO:0006468
Ssu3g1777 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 173 282 - -
Ssu3g1777 1053 ProSiteProfiles Protein kinase domain profile. 769 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1777 1053 SMART LRR_typ_2 578 601 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 345 369 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 602 625 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 129 152 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 393 416 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 105 128 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 492 516 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 468 491 IPR003591 -
Ssu3g1777 1053 SMART LRR_typ_2 273 296 IPR003591 -
Ssu3g1777 1053 SUPERFAMILY RNI-like 223 518 - -
Ssu3g1777 1053 SMART LRR_sd22_2 602 628 - -
Ssu3g1777 1053 SMART LRR_sd22_2 578 601 - -
Ssu3g1777 1053 SMART LRR_sd22_2 129 155 - -
Ssu3g1777 1053 SMART LRR_sd22_2 492 515 - -
Ssu3g1777 1053 SMART LRR_sd22_2 393 411 - -
Ssu3g1777 1053 SMART LRR_sd22_2 105 124 - -
Ssu3g1777 1053 PRINTS Leucine-rich repeat signature 602 615 - -
Ssu3g1777 1053 PRINTS Leucine-rich repeat signature 495 508 - -
Ssu3g1777 1053 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Ssu3g1777 1053 SUPERFAMILY Protein kinase-like (PK-like) 751 1040 IPR011009 -
Ssu3g1777 1053 Gene3D Ribonuclease Inhibitor 33 300 IPR032675 -
Ssu3g1777 1053 Gene3D Transferase(Phosphotransferase) domain 1 845 1047 - -
Ssu3g1777 1053 Gene3D Ribonuclease Inhibitor 371 675 IPR032675 -
Ssu3g1777 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 164 - -
Ssu3g1777 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 173 282 - -
Ssu3g1777 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 449 517 - -
Ssu3g1777 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 439 - -
Ssu3g1777 1053 SUPERFAMILY RNI-like 63 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1777 Ssu-Chr3 55034921 55038082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1777 39 1052 Receptor kinase-like Gene Family AT1G55610 34.554 3.34e-171 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Ssu3g1777 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1777 - - gmx:100789534 1835.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1777 3 55034921 55038082 Ssu3g1777 3 55034921 55038082 ECH